Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pumilio RNA-binding repeat

Term: IPR001313  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene99920 SustainPine v3.0 844
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
FL-Next: sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Pumilio-family RNA binding repeat containing protein, expressed 2.023e-11
Internal
sp_v3.0_unigene100306 SustainPine v3.0 707
AutoFact: DUF632 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene101555 SustainPine v3.0 573
AutoFact: DUF632 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Leucine zipper protein-like 1.211e-06
Internal
sp_v3.0_unigene107837 SustainPine v3.0 370
AutoFact: [J] COG5099 RNA-binding protein of the Puf family, translational repressor 7.0e-22
FL-Next: sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Pumilio-family RNA binding repeat containing protein, expressed 7.437e-08
Putative C-terminus
sp_v3.0_unigene124542 SustainPine v3.0 282
AutoFact: Contains similarity to RNA binding protein PufA from Dictyostelium discoideum gi|5106561 and contains multiple Pumilio-family RNA binding PF|00806 domains [Arabidopsis thaliana] 3.0e-25
FL-Next: sp=Putative pumilio homolog 8, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Pumilio-family RNA binding repeat containing protein, expressed 9.84e-12
Internal
sp_v3.0_unigene126996 SustainPine v3.0 495
AutoFact: DUF659 domain containing protein 6.0e-24
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene127066 SustainPine v3.0 445
AutoFact: DUF659 domain containing protein 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene131386 SustainPine v3.0 259
AutoFact: Unassigned protein
FL-Next: Isoform 2 of Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 0.0
Internal
sp_v3.0_unigene131709 SustainPine v3.0 206
AutoFact: DUF659 domain containing protein 9.0e-24
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene133631 SustainPine v3.0 215
AutoFact: DUF659 domain containing protein 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene140808 SustainPine v3.0 605
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 9.641e-06
N-terminus
sp_v3.0_unigene141335 SustainPine v3.0 288
AutoFact: DUF659 domain containing protein 6.0e-31
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene159732 SustainPine v3.0 224
AutoFact: DUF659 domain containing protein 8.0e-29
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene160942 SustainPine v3.0 374
AutoFact: DUF659 domain containing protein 6.0e-24
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene161305 SustainPine v3.0 468
AutoFact: protein pumilio 24 [Arabidopsis thaliana] sp|Q9LRZ3.1|PUM24_ARATH RecName: Full=Pumilio homolog 24; Short=APUM-24; Short=AtPUM24 dbj|BAA95774.1| unnamed protein product [Arabidopsis thaliana] gb|AAK73996.1| AT3g16810/K20I9_3 [Arabidopsis thaliana] gb|AEE7 7.0e-18
FL-Next: sp=Pumilio homolog 24; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene163163 SustainPine v3.0 285
AutoFact: DUF659 domain containing protein 5.0e-28
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene165136 SustainPine v3.0 272
AutoFact: DUF659 domain containing protein 7.0e-31
FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene167100 SustainPine v3.0 239
AutoFact: [J] COG5099 RNA-binding protein of the Puf family, translational repressor 9.0e-11
FL-Next: sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Pumilio-family RNA binding repeat containing protein, expressed 7.503e-12
Internal
sp_v3.0_unigene186477 SustainPine v3.0 644
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA binding protein, putative 2.652e-06
Complete
sp_v3.0_unigene202606 SustainPine v3.0 399
AutoFact: DUF659 domain containing protein 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain