Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromosome

Term: GO:0005694  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene119827 SustainPine v3.0 224
• AutoFact: FACT complex subunit SPT16, putative n=1 Tax=Ricinus communis RepID=B9RFP6_RICCO 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Facilitates chromatin transcription complex subunit SPT16 6.203e-13
Internal
sp_v3.0_unigene120619 SustainPine v3.0 330
• AutoFact: mismatch repair-related protein [Cryptococcus neoformans var. neoformans JEC21] gb|AAW42965.1| mismatch repair-related protein, putative [Cryptococcus neoformans var. neoformans JEC21] 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein F8D20.30 8.285e-06
C-terminus
sp_v3.0_unigene122169 SustainPine v3.0 246
• AutoFact: Myosin XI, putative n=1 Tax=Ricinus communis RepID=B9S596_RICCO 6.0e-35
• FL-Next: tr=Myosin XI, putative; Ricinus communis (Castor bean). 0.0
• Sma3: Myosin 1.368e-24
Internal
sp_v3.0_unigene124095 SustainPine v3.0 220
• AutoFact: ataxia-telangiectasia mutated protein (Atm) [Arabidopsis thaliana] 1.0e-21
• FL-Next: sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene124749 SustainPine v3.0 163
• AutoFact: Myosin class 11-2 n=1 Tax=Adiantum capillus-veneris RepID=Q5NTX0_ADICA 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Myosin XI, putative 1.077e-15
Internal
sp_v3.0_unigene125917 SustainPine v3.0 309
• AutoFact: serine/threonine-protein kinase ATR [Arabidopsis thaliana] sp|Q9FKS4.2|ATR_ARATH RecName: Full=Serine/threonine-protein kinase ATR; Short=AtATR; AltName: Full=Ataxia telangiectasia-mutated and Rad3-related homolog; AltName: Full=DNA repair protein ATR; Al 1.0e-37
• FL-Next: sp=Serine/threonine-protein kinase ATR; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Serine/threonine-protein kinase ATR 1.701e-08
Internal
sp_v3.0_unigene127496 SustainPine v3.0 532
• AutoFact: Eukaryotic translation initiation factor 5A n=3 Tax=Picea RepID=Q3ZDK6_PICAB 2.0e-27
• FL-Next: tr=Eukaryotic translation initiation factor 5A; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 4.053e-27
Putative Complete
sp_v3.0_unigene127991 SustainPine v3.0 1226
• AutoFact: Phosphoglycerate kinase n=1 Tax=Picea sitchensis RepID=B8LKQ1_PICSI 0.0
• FL-Next: sp=Phosphoglycerate kinase; Pinus pinaster (Maritime pine). 0.0
• Sma3: Phosphoglycerate kinase 0.0
Putative C-terminus
sp_v3.0_unigene128142 SustainPine v3.0 612
• AutoFact: Structural maintenance of chromosomes protein 4 n=2 Tax=Arabidopsis thaliana RepID=SMC4_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
C-terminus
sp_v3.0_unigene129382 SustainPine v3.0 291
• AutoFact: DNA topoisomerase n=1 Tax=Populus trichocarpa RepID=B9H4K8_POPTR 6.0e-07
• FL-Next: sp=DNA topoisomerase; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene130346 SustainPine v3.0 273
• AutoFact: myosin-like protein [Arabidopsis thaliana] 1.0e-38
• FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
• Sma3: Myosin XI, putative 1.145e-15
Internal
sp_v3.0_unigene130752 SustainPine v3.0 249
• AutoFact: E3 ubiquitin-protein ligase BRE1-like 2 [Arabidopsis thaliana] gb|ABJ17142.1| At1g55255 [Arabidopsis thaliana] gb|AEE33211.1| E3 ubiquitin-protein ligase BRE1-like 2 [Arabidopsis thaliana] 3.0e-19
• FL-Next: sp=E3 ubiquitin-protein ligase BRE1-like 2; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: E3 ubiquitin-protein ligase BRE1-like 2 2.613e-08
C-terminus
sp_v3.0_unigene131972 SustainPine v3.0 214
• AutoFact: structural maintenance of chromosomes 5 [Arabidopsis thaliana] emb|CAC01791.1| putative protein [Arabidopsis thaliana] gb|AED92224.1| structural maintenance of chromosomes 5 [Arabidopsis thaliana] 3.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene135613 SustainPine v3.0 275
• AutoFact: structural maintenance of chromosomes 5 [Arabidopsis thaliana] emb|CAC01791.1| putative protein [Arabidopsis thaliana] gb|AED92224.1| structural maintenance of chromosomes 5 [Arabidopsis thaliana] 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene137627 SustainPine v3.0 167
unknown
sp_v3.0_unigene138108 SustainPine v3.0 210
• AutoFact: DNA topoisomerase 2 n=2 Tax=Malus x domestica RepID=Q2L363_MALDO 1.0e-10
• FL-Next: sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA topoisomerase 2 2.973e-35
Internal
sp_v3.0_unigene141014 SustainPine v3.0 871
• AutoFact: RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase I gb|AAB41401.1| topoisomerase I [Daucus carota] 2.0e-39
• FL-Next: sp=DNA topoisomerase 1; Daucus carota (Carrot). 0.0
• Sma3: Topoisomerase I 2.543e-25
Internal
sp_v3.0_unigene142581 SustainPine v3.0 462
• AutoFact: DNA topoisomerase II, putative n=1 Tax=Ricinus communis RepID=B9RVN3_RICCO 2.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene149117 SustainPine v3.0 237
• AutoFact: Structural maintenance of chromosomes protein 4 n=2 Tax=Arabidopsis thaliana RepID=SMC4_ARATH 3.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene149164 SustainPine v3.0 111
• AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 3.0e-08
• FL-Next: sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain