Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Chromo domain/shadow

Term: IPR000953  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene39756 SustainPine v2.0 519
• AutoFact: CHD3-type chromatin-remodeling factor PICKLE [Arabidopsis thaliana] sp|Q9S775.1|PKL_ARATH RecName: Full=CHD3-type chromatin-remodeling factor PICKLE; AltName: Full=Protein GYMNOS gb|AAF07084.1|AF185578_1 GYMNOS/PICKLE [Arabidopsis thaliana] gb|AAF13875.1| 2.99878e-43
• FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: chromatin remodeling complex subunit 0.0
Internal
sp_v2.0_unigene40451 SustainPine v2.0 353
• AutoFact: Putative polyprotein n=1 Tax=Solanum habrochaites RepID=B3TPP6_SOLHA 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ac079131_10 copia-type 3.62119e-28
Putative N-terminus
sp_v2.0_unigene40857 SustainPine v2.0 520
• AutoFact: RecName: Full=Probable pleiotropic drug resistance protein 2 emb|CAD59566.1| PDR-like ABC transporter [Oryza sativa Japonica Group] tpg|DAA00885.1| TPA_exp: PDR2 ABC transporter [Oryza sativa (japonica cultivar-group)] 7.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pleiotropic drug resistance protein 1-like 5.5774e-22
Putative N-terminus
sp_v2.0_unigene40922 SustainPine v2.0 477
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=5 Tax=Oryza sativa RepID=Q2R1L3_ORYSJ 3.00004e-41
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 5.55685e-41
Internal
sp_v2.0_unigene41059 SustainPine v2.0 292
• AutoFact: chromatin remodeling 5 [Arabidopsis thaliana] gb|AEC06230.1| chromatin remodeling 5 [Arabidopsis thaliana] 6.0e-22
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: chromodomain-helicase-dna-binding protein 2-like 4.56641e-31
Internal
sp_v2.0_unigene41370 SustainPine v2.0 301
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 1.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon unclassified 3.01564e-32
Complete
sp_v2.0_unigene41383 SustainPine v2.0 305
• AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TJL1_PHYPA 8.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: snf2 family dna-dependent atpase 5.73387e-29
Internal
sp_v2.0_unigene41393 SustainPine v2.0 370
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QTW2_ORYSJ 6.0e-30
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 1.57905e-34
Putative N-terminus
sp_v2.0_unigene41515 SustainPine v2.0 388
• AutoFact: Reverse transcriptase (Fragment) n=7 Tax=Prunus mume RepID=C8C9R0_PRUMU 1.99965e-42
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: reverse transcriptase 0.0
Putative Complete
sp_v2.0_unigene41631 SustainPine v2.0 401
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=O64892_ANACO 3.0e-32
• FL-Next: tr=OSIGBa0147J19.11 protein; Oryza sativa (Rice). 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 5.97381e-32
Internal
sp_v2.0_unigene41639 SustainPine v2.0 652
• AutoFact: Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: gag-pol polyprotein 0.0
Putative Complete
sp_v2.0_unigene42007 SustainPine v2.0 652
• AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM32_MARPO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
sp_v2.0_unigene42414 SustainPine v2.0 560
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 1.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon unclassified 2.18061e-35
Putative C-terminus
sp_v2.0_unigene42554 SustainPine v2.0 422
• AutoFact: RecName: Full=Probable pleiotropic drug resistance protein 2 emb|CAD59566.1| PDR-like ABC transporter [Oryza sativa Japonica Group] tpg|DAA00885.1| TPA_exp: PDR2 ABC transporter [Oryza sativa (japonica cultivar-group)] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: atp-binding cassette 0.0
Putative N-terminus
sp_v2.0_unigene42574 SustainPine v2.0 374
• AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9GVF7_POPTR 2.0e-28
• FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: chromatin remodeling complex subunit 3.7229e-33
Internal
sp_v2.0_unigene43055 SustainPine v2.0 698
• AutoFact: Receptor kinase Lecrk n=1 Tax=Gossypium hirsutum RepID=Q7Y0Y5_GOSHI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: l-type lectin-domain containing receptor kinase -like 0.0
Internal
sp_v2.0_unigene43141 SustainPine v2.0 466
• AutoFact: Retrotransposon protein n=1 Tax=Beta vulgaris RepID=A2I5E5_BETVU 2.0e-20
• FL-Next: tr=Retrotransposon protein; Beta vulgaris (Sugar beet). 0.0
• Blast2go: retrotransposon protein 3.67364e-20
Internal
sp_v2.0_unigene43266 SustainPine v2.0 250
• AutoFact: Receptor serine/threonine kinase, putative n=1 Tax=Ricinus communis RepID=B9RIJ3_RICCO 4.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: probable receptor-like protein kinase at5g39020-like 1.99e-36
Internal
sp_v2.0_unigene43414 SustainPine v2.0 417
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=5 Tax=Oryza sativa RepID=Q2R1L3_ORYSJ 2.0e-40
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 0.0
C-terminus
sp_v2.0_unigene43492 SustainPine v2.0 660
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon unclassified 8.36575e-43
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain