Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Chromo domain/shadow

Term: IPR000953  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene20777 SustainPine v2.0 897
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
C-terminus
sp_v2.0_unigene21089 SustainPine v2.0 408
AutoFact: Hcr2-p3 n=2 Tax=Solanum pimpinellifolium RepID=Q4G2V8_SOLPI 2.0e-14
FL-Next: tr=Somatic embryogenesis receptor-like kinase 1; Araucaria angustifolia. 0.0
Blast2go: hcr2- 3.6869e-18
Internal
sp_v2.0_unigene21331 SustainPine v2.0 339
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: hypothetical protein VITISV_016106 [Vitis vinifera] 1.64214e-16
Putative N-terminus
sp_v2.0_unigene21649 SustainPine v2.0 935
AutoFact: Cytosine-specific methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTS9_ELAGV 0.0
FL-Next: sp=DNA (cytosine-5)-methyltransferase 1; Zea mays (Maize). 0.0
Blast2go: dna (cytosine-5)-methyltransferase cmt3-like 0.0
C-terminus
sp_v2.0_unigene21817 SustainPine v2.0 520
AutoFact: Unassigned protein
FL-Next: tr=Disease resistance protein; pekinensis). 0.0
Blast2go: disease resistance protein 7.31522e-29
Internal
sp_v2.0_unigene21914 SustainPine v2.0 1976
AutoFact: S15/NS1, RNA-binding protein [Arabidopsis thaliana] gb|AAF82151.1|AC034256_15 Contains similarity to an unknown protein T21F11.5 gi|6730725 from Arabidopsis thaliana BAC T21F11 gb|AC018849 and contains a Ribosomal Protein S15 PF|00312 domain gb|AAK32782.1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: s15 rna-binding protein 0.0
Complete
sp_v2.0_unigene22221 SustainPine v2.0 2128
AutoFact: putative protein kinase [Arabidopsis thaliana] gb|AAC04483.1| putative protein kinase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: receptor like protein kinase -like 0.0
Putative C-terminus
sp_v2.0_unigene22251 SustainPine v2.0 673
AutoFact: OSJNBa0017P10.4 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XQ51_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 0.0
Putative Complete
sp_v2.0_unigene22685 SustainPine v2.0 924
AutoFact: Cinnamoyl-CoA reductase n=3 Tax=Pinaceae RepID=B3VKE9_9CONI 0.0
FL-Next: tr=Cinnamoyl-CoA reductase; Pinus taeda (Loblolly pine). 0.0
Blast2go: cinnamoyl- reductase 0.0
N-terminus
sp_v2.0_unigene23398 SustainPine v2.0 735
AutoFact: RecName: Full=Putative pleiotropic drug resistance protein 7 emb|CAD59570.1| PDR-like ABC transporter [Oryza sativa Japonica Group] dbj|BAD24998.1| PDR-like ABC transporter [Oryza sativa Japonica Group] dbj|BAD25007.1| PDR-like ABC transporter [Oryza sati 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pleiotropic drug resistance protein 2-like 0.0
N-terminus
sp_v2.0_unigene23970 SustainPine v2.0 468
AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 1.99965e-42
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: ac069473_8gypsy ty-3 retroelement polyprotein 69905-74404 0.0
C-terminus
sp_v2.0_unigene24375 SustainPine v2.0 1594
AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
Complete
sp_v2.0_unigene24573 SustainPine v2.0 2938
AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
Complete
sp_v2.0_unigene24580 SustainPine v2.0 804
AutoFact: Polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q8W153_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
N-terminus
sp_v2.0_unigene24652 SustainPine v2.0 2393
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold 0.0
Complete
sp_v2.0_unigene24662 SustainPine v2.0 1250
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold 0.0
Putative Complete
sp_v2.0_unigene25285 SustainPine v2.0 1606
AutoFact: Myosin_tail_1 multi-domain protein 7.0e-06
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: uncharacterized protein loc100252352 4.2039e-45
Internal
sp_v2.0_unigene25293 SustainPine v2.0 653
AutoFact: ATPase splayed [Arabidopsis thaliana] gb|AEC08101.1| ATPase splayed [Arabidopsis thaliana] 0.0
FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: atpase splayed 0.0
Internal
sp_v2.0_unigene25452 SustainPine v2.0 1375
AutoFact: mortality factor 4-like protein 1 [Arabidopsis thaliana] gb|AAK59778.1| AT4g37280/C7A10_80 [Arabidopsis thaliana] gb|AAM98302.1| At4g37280/C7A10_80 [Arabidopsis thaliana] gb|AEE86776.1| mortality factor 4-like protein 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mortality factor 4-like protein 1 0.0
Complete
sp_v2.0_unigene25478 SustainPine v2.0 1807
AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain