Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Chromo domain/shadow

Term: IPR000953  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene5264 SustainPine v2.0 2508
AutoFact: putative helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna helicase ino80-like 0.0
Complete
sp_v2.0_unigene5622 SustainPine v2.0 567
AutoFact: Chromo domain containing protein 8.0e-05
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: hypothetical protein VITISV_014148 [Vitis vinifera] 3.14713e-23
C-terminus
sp_v2.0_unigene5762 SustainPine v2.0 639
AutoFact: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SDY6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: l-type lectin-domain containing receptor kinase -like 0.0
Internal
sp_v2.0_unigene6602 SustainPine v2.0 790
AutoFact: lectin-like receptor kinase 7;3 [Medicago truncatula] 8.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: l-type lectin-domain containing receptor kinase -like 0.0
C-terminus
sp_v2.0_unigene7944 SustainPine v2.0 1267
AutoFact: RecName: Full=Nitrate reductase [NADH]; Short=NR gb|AAA33114.1| nitrate reductase [Cucurbita maxima] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nitrate reductase 0.0
Complete
sp_v2.0_unigene8720 SustainPine v2.0 931
AutoFact: ATPase splayed [Arabidopsis thaliana] gb|AEC08101.1| ATPase splayed [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atpase splayed 0.0
Putative N-terminus
sp_v2.0_unigene8756 SustainPine v2.0 3811
AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent helicase brm-like 0.0
Putative Complete
sp_v2.0_unigene8865 SustainPine v2.0 722
AutoFact: SNF2 family DNA-dependent ATPase (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TTS1_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromodomain-helicase-dna-binding protein 2-like 0.0
Putative N-terminus
sp_v2.0_unigene9789 SustainPine v2.0 971
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
Putative Complete
sp_v2.0_unigene10054 SustainPine v2.0 1293
AutoFact: Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9S058_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cinnamoyl- reductase 0.0
Complete
sp_v2.0_unigene10280 SustainPine v2.0 821
AutoFact: putative protein kinase Xa21, receptor type precursor [Oryza sativa Japonica Group] 1.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 2.46629e-43
C-terminus
sp_v2.0_unigene10364 SustainPine v2.0 815
AutoFact: human Mi-2 autoantigen-like protein [Arabidopsis thaliana] dbj|BAB08833.1| helicase-like protein [Arabidopsis thaliana] 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 3.53322e-32
Putative N-terminus
sp_v2.0_unigene10497 SustainPine v2.0 1141
AutoFact: [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: chromodomain-helicase-dna-binding protein 2-like 0.0
Internal
sp_v2.0_unigene10847 SustainPine v2.0 1112
AutoFact: Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 0.0
Putative N-terminus
sp_v2.0_unigene12413 SustainPine v2.0 582
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T5W9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: proline-rich receptor-like protein kinase perk8-like 0.0
Internal
sp_v2.0_unigene12542 SustainPine v2.0 637
AutoFact: SWR1 complex protein, SNF2 family DNA-dependent ATPase (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U2Y8_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: swr1 complex snf2 family dna-dependent atpase 0.0
Putative C-terminus
sp_v2.0_unigene12722 SustainPine v2.0 2020
AutoFact: Histone acetyltransferase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJM4_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone acetyltransferase 0.0
Putative Complete
sp_v2.0_unigene13200 SustainPine v2.0 618
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 3.0e-30
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 5.32025e-30
Putative Complete
sp_v2.0_unigene13315 SustainPine v2.0 486
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 1.56398e-40
Internal
sp_v2.0_unigene13340 SustainPine v2.0 293
AutoFact: Reverse transcriptase (Fragment) n=2 Tax=Peperomia caperata RepID=Q56GE9_PEPCA 3.0e-32
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 3.62936e-43
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain