Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Chromo domain/shadow

Term: IPR000953  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene77458 SustainPine v2.0 418
AutoFact: Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 0.0
Putative N-terminus
sp_v2.0_unigene77467 SustainPine v2.0 360
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase) n=1 Tax=Medicago truncatula RepID=Q2HW78_MEDTR 5.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v2.0_unigene77680 SustainPine v2.0 583
AutoFact: OSJNBa0024J22.19 protein n=2 Tax=Oryza sativa RepID=Q7XRN3_ORYSJ 1.4013e-45
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: gag-pol polyprotein 0.0
Putative C-terminus
sp_v2.0_unigene77701 SustainPine v2.0 650
AutoFact: Caltractin, putative n=1 Tax=Ricinus communis RepID=B9SC54_RICCO 2.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: caltractin 1.99405e-42
N-terminus
sp_v2.0_unigene77819 SustainPine v2.0 339
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus radiata RepID=Q56GF9_PINRA 4.0e-34
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 4.92852e-35
Putative C-terminus
sp_v2.0_unigene77905 SustainPine v2.0 644
AutoFact: Cinnamyl alcohol dehydrogenase n=1 Tax=Elaeis guineensis RepID=B3TLU8_ELAGV 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cinnamyl alcohol dehydrogenase 0.0
N-terminus
sp_v2.0_unigene78085 SustainPine v2.0 348
AutoFact: Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVJ7_9POAL 8.0e-27
FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
Blast2go: retrotransposon ty3-gypsy subclass 5.06301e-31
Internal
sp_v2.0_unigene78517 SustainPine v2.0 839
AutoFact: putative dihydroflavonol reductase [Oryza sativa] 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like isoform 2 0.0
Putative N-terminus
sp_v2.0_unigene78924 SustainPine v2.0 404
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q60ET2_ORYSJ 7.00649e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 0.0
Putative Complete
sp_v2.0_unigene79459 SustainPine v2.0 374
AutoFact: Cf-2.1 n=3 Tax=Solanum pimpinellifolium RepID=Q41397_SOLPI 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hcr2- 6.93123e-31
Internal
sp_v2.0_unigene81352 SustainPine v2.0 586
AutoFact: Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9SC77_RICCO 1.0e-31
FL-Next: tr=Cinnamoyl-CoA reductase; Pinus massoniana. 0.0
Blast2go: bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like 8.6553e-38
Putative C-terminus
sp_v2.0_unigene81836 SustainPine v2.0 275
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Cycas revoluta RepID=Q56GG4_CYCRE 3.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 8.54792e-44
Putative C-terminus
sp_v2.0_unigene81928 SustainPine v2.0 609
AutoFact: PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558 0.0
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 0.0
Complete
sp_v2.0_unigene81945 SustainPine v2.0 184
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Cycas revoluta RepID=Q56GG4_CYCRE 7.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 1.25143e-30
C-terminus
sp_v2.0_unigene82524 SustainPine v2.0 1580
AutoFact: Pleiotropic drug resistance protein 3 n=4 Tax=Oryza sativa RepID=PDR3_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pdr-like abc transporter 0.0
Putative Complete
sp_v2.0_unigene82577 SustainPine v2.0 693
AutoFact: PDR-like ABC transporter n=3 Tax=Oryza sativa Japonica Group RepID=Q8GU84_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-binding cassette 0.0
Putative C-terminus
sp_v2.0_unigene82728 SustainPine v2.0 393
AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 5.00264e-43
FL-Next: tr=Polyprotein; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: pol protein integrase region 0.0
Internal
sp_v2.0_unigene83376 SustainPine v2.0 731
AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pol protein integrase region 0.0
Internal
sp_v2.0_unigene83477 SustainPine v2.0 416
AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 1.0e-34
FL-Next: tr=Gypsy/Ty-3 retroelement polyprotein; 69905-74404; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pol protein integrase region 1.04593e-34
Internal
sp_v2.0_unigene83492 SustainPine v2.0 734
AutoFact: Pol protein (Fragment) n=2 Tax=Picea abies RepID=Q9M6P0_PICAB 1.0e-34
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: retrotransposon unclassified 1.46629e-38
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain