Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Like-Sm ribonucleoprotein (LSM) domain

Term: IPR001163  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene63812 SustainPine v2.0 510
AutoFact: Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] gb|AEE84034.1| Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] 4.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein-associated protein b 1.20757e-29
Putative Complete
sp_v2.0_unigene63871 SustainPine v2.0 673
AutoFact: Small nuclear ribonucleoprotein-associated protein, putative n=2 Tax=Ricinus communis RepID=B9SV77_RICCO 3.0e-35
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: small nuclear ribonucleoprotein associated protein b 9.38348e-36
N-terminus
sp_v2.0_unigene64050 SustainPine v2.0 447
AutoFact: BTB/POZ and MATH domain-containing protein 2 n=2 Tax=Arabidopsis RepID=BPM2_ARATH 5.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: speckle-type poz 7.93972e-22
Putative C-terminus
sp_v2.0_unigene66453 SustainPine v2.0 285
AutoFact: P-loop containing nucleoside triphosphate hydrolase-like protein n=5 Tax=Arabidopsis RepID=F4JEX5_ARATH 4.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: fidgetin-like protein 1-like 8.63117e-34
Internal
sp_v2.0_unigene66535 SustainPine v2.0 340
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SAN5_RICCO 1.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp binding 1.88627e-22
C-terminus
sp_v2.0_unigene67088 SustainPine v2.0 414
AutoFact: small nuclear ribonucleoprotein, putative [Arabidopsis thaliana] 9.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein sm d3 2.08892e-18
Putative Complete
sp_v2.0_unigene67458 SustainPine v2.0 251
AutoFact: U6 snRNA-associated Sm-like protein LSm1 [Arabidopsis thaliana] ref|NP_850580.1| U6 snRNA-associated Sm-like protein LSm1 [Arabidopsis thaliana] gb|AAM61336.1| Sm protein, putative [Arabidopsis thaliana] gb|AAO22620.1| putative Sm protein [Arabidopsis tha 1.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u6 snrna-associated sm-like protein lsm1 2.49816e-28
C-terminus
sp_v2.0_unigene76828 SustainPine v2.0 844
AutoFact: small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] ref|NP_973710.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] ref|NP_001078331.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] emb|CAB83134.1| small nuclear ribonucleoprot 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleo protein 0.0
Complete
sp_v2.0_unigene77051 SustainPine v2.0 429
AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein g 2.92531e-39
Complete
sp_v2.0_unigene77117 SustainPine v2.0 251
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v2.0_unigene77948 SustainPine v2.0 501
AutoFact: Small nuclear ribonucleoprotein polypeptide G (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q677D4_HYAOR 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein g 9.07795e-32
Complete
sp_v2.0_unigene79350 SustainPine v2.0 350
AutoFact: Sm-like protein [Arabidopsis thaliana] 2.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
sp_v2.0_unigene80644 SustainPine v2.0 355
AutoFact: Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RSP3_PHYPA 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein e 5.08037e-28
Putative Complete
sp_v2.0_unigene81470 SustainPine v2.0 400
AutoFact: Sm-like protein [Arabidopsis thaliana] 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: predicted protein [Nematostella vectensis] 7.11258e-11
C-terminus
sp_v2.0_unigene82496 SustainPine v2.0 492
AutoFact: Heat shock protein 70 (Fragment) n=1 Tax=Arachis diogoi RepID=E3NYT2_9FABA 1.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heat shock protein 70 6.97721e-41
Internal
sp_v2.0_unigene85330 SustainPine v2.0 417
AutoFact: small nuclear ribonucleoprotein D1 [Arabidopsis thaliana] ref|NP_001189837.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana] gb|AAF13077.1|AC009176_4 putative small nuclear ribonucleoprotein (Sm-D1) [Arabidopsis thaliana] gb|AAL47458.1| AT3g075 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 1.21452e-13
Putative Complete
sp_v2.0_unigene86148 SustainPine v2.0 670
AutoFact: small nuclear ribonucleoprotein, putative [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein sm d3 0.0
Complete
sp_v2.0_unigene89502 SustainPine v2.0 415
AutoFact: small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis 2.0e-26
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 2.35984e-33
N-terminus
sp_v2.0_unigene90750 SustainPine v2.0 762
AutoFact: Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] gb|AEE84034.1| Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] 6.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein-associated protein b 0.0
Complete
sp_v2.0_unigene91847 SustainPine v2.0 864
AutoFact: putative small nuclear ribonucleoprotein [Arabidopsis thaliana] ref|XP_002886267.1| hypothetical protein ARALYDRAFT_900374 [Arabidopsis lyrata subsp. lyrata] gb|AAD08943.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana] gb|AAM64436.1| p 2.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein e 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain