Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene13444 SustainPine v2.0 349
• AutoFact: ATP-dependent RNA helicase DDX35 n=2 Tax=Arabidopsis RepID=F4JRJ6_ARATH 8.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: probable atp-dependent rna helicase dhx35 1.97146e-12
Putative C-terminus
sp_v2.0_unigene13510 SustainPine v2.0 622
• AutoFact: NF-X1-type zinc finger protein NFXL1 [Arabidopsis thaliana] sp|Q9SY59.1|NFXL1_ARATH RecName: Full=NF-X1-type zinc finger protein NFXL1; Short=AtNFXL1 gb|AAD32867.1|AC005489_5 F14N23.5 [Arabidopsis thaliana] gb|AEE28549.1| NF-X1-type zinc finger protein NF 3.0e-39
• FL-Next: sp=NF-X1-type zinc finger protein NFXL1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nf-x1-type zinc finger protein nfxl1-like 0.0
Internal
sp_v2.0_unigene13519 SustainPine v2.0 206
• AutoFact: putative 5-3 exoribonuclease [Oryza sativa Japonica Group] 1.0e-26
• FL-Next: Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 0.0
• Blast2go: 5 -3 exoribonuclease 2.77112e-32
Internal
sp_v2.0_unigene13572 SustainPine v2.0 412
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 3.0e-22
• FL-Next: tr=Polyprotein; Primula vulgaris. 0.0
• Blast2go: retrotransposon unclassified 3.07513e-22
Internal
sp_v2.0_unigene13589 SustainPine v2.0 1833
• AutoFact: DEAD-box ATP-dependent RNA helicase 57 [Arabidopsis thaliana] sp|Q84TG1.1|RH57_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 57 gb|AAO64768.1| At3g09720 [Arabidopsis thaliana] dbj|BAE99340.1| RNA helicase like protein [Arabidopsis thaliana] gb|A 0.0
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 57; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: dead-box atp-dependent rna helicase 57 0.0
Complete
sp_v2.0_unigene13620 SustainPine v2.0 348
• AutoFact: RVT_2 domain containing protein 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon protein 1.01989e-14
Internal
sp_v2.0_unigene13692 SustainPine v2.0 807
• AutoFact: multiple RNA-binding domain-containing protein 1 [Lodderomyces elongisporus NRRL YB-4239] gb|EDK44746.1| multiple RNA-binding domain-containing protein 1 [Lodderomyces elongisporus NRRL YB-4239] 5.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: probable rna-binding protein 19-like 4.2039e-45
Internal
sp_v2.0_unigene13750 SustainPine v2.0 651
• AutoFact: SAP domain-containing protein [Arabidopsis thaliana] gb|AAT41750.1| At5g63460 [Arabidopsis thaliana] dbj|BAD44475.1| unknown protein [Arabidopsis thaliana] dbj|BAD44602.1| unknown protein [Arabidopsis thaliana] gb|AAU84684.1| At5g63460 [Arabidopsis thalia 4.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: sap domain-containing protein 2.83062e-43
Putative N-terminus
sp_v2.0_unigene13765 SustainPine v2.0 1403
• AutoFact: pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 1.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: werner syndrome-like exonuclease-like 0.0
Complete
sp_v2.0_unigene13769 SustainPine v2.0 950
• AutoFact: Dimer_Tnp_hAT domain containing protein 2.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: hat family dimerization domain-containing protein 0.0
Putative N-terminus
sp_v2.0_unigene13818 SustainPine v2.0 944
• AutoFact: Os02g0513700 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0E0X9_ORYSJ 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: hat dimerisation domain-containing 2.94474e-29
Putative N-terminus
sp_v2.0_unigene13941 SustainPine v2.0 692
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene13977 SustainPine v2.0 1149
• AutoFact: WS00753.C21_I19 WS-PS-N-A-8 Picea glauca cDNA clone WS00753_I19 3, mRNA sequence. 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: indeterminate -domain 14 protein 4.48416e-44
Internal
sp_v2.0_unigene13995 SustainPine v2.0 1076
• AutoFact: DNA-directed RNA polymerase subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SFI8_PHYPA 5.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerase i subunit rpa12 0.0
Complete
sp_v2.0_unigene14001 SustainPine v2.0 715
• AutoFact: zinc finger protein MAGPIE [Arabidopsis thaliana] sp|Q9ZWA6.1|MGP_ARATH RecName: Full=Zinc finger protein MAGPIE gb|AAD10684.1| putative zinc-finger protein [Arabidopsis thaliana] gb|AAP12858.1| At1g03840 [Arabidopsis thaliana] dbj|BAE99815.1| putative DN 1.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 2.8026e-45
Putative N-terminus
sp_v2.0_unigene14382 SustainPine v2.0 412
• AutoFact: Oligoribonuclease, putative n=1 Tax=Cryptococcus neoformans var. neoformans JEC21 RepID=Q5KPH7_CRYNJ 9.99967e-42
• FL-Next: sp=Oligoribonuclease; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: oligoribonuclease 0.0
Internal
sp_v2.0_unigene14453 SustainPine v2.0 1740
• AutoFact: Zinc finger CCCH domain-containing protein 18 n=4 Tax=Oryza sativa RepID=C3H18_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: zinc finger ccch domain-containing protein 18-like 0.0
Complete
sp_v2.0_unigene14456 SustainPine v2.0 1206
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RGI9_RICCO 8.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: d111 g-patch domain-containing protein 0.0
Complete
sp_v2.0_unigene14492 SustainPine v2.0 1745
• AutoFact: heterogeneous nuclear ribonucleoprotein R [Gallus gallus] ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Meleagris gallopavo] 4.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein r 0.0
Complete
sp_v2.0_unigene14824 SustainPine v2.0 1725
• AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
• FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: atp-dependent helicase brm 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain