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Assembly Name: uagpf v2.0

Name: nucleolus

Term: GO:0005730  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene16630 uagpf v2.0 734
AutoFact: RNA polymerase I subunit 43 [Arabidopsis thaliana] gb|AAK62414.1|AF386969_1 RNA polymerase subunit (isoform B) [Arabidopsis thaliana] gb|AAB00529.1| RNA polymerase subunit [Arabidopsis thaliana] gb|AAB71974.1| RNA polymerase subunit (isoform B) [Arabidops 0.0
FL-Next: tr=DNA-directed RNA polymerase I/III subunits, putative; Ricinus communis (Castor bean). 0.0
Blast2go: rna polymerase subunit 0.0
C-terminus
uagpf_v2_unigene16641 uagpf v2.0 564
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 9 0.0
Blast2go: dead-box atp-dependent rna helicase 53-like 0.0
unknown
uagpf_v2_unigene16669 uagpf v2.0 916
AutoFact: Proliferating-cell nucleolar antigen p120, putative n=1 Tax=Ricinus communis RepID=B9S9W8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal rna methyltransferase nop2-like 0.0
C-terminus
uagpf_v2_unigene16725 uagpf v2.0 725
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_77.assembly12x (Fragment) n=3 Tax=core eudicotyledons RepID=D7SY66_VITVI 0.0
FL-Next: sp=Importin subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene16847 uagpf v2.0 672
AutoFact: U2 small nuclear ribonucleoprotein A n=1 Tax=Gossypium hirsutum RepID=D6N3G9_GOSHI 0.0
FL-Next: sp=U2 small nuclear ribonucleoprotein A'; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: u2 small nuclear ribonucleoprotein a 0.0
N-terminus
uagpf_v2_unigene16892 uagpf v2.0 1071
AutoFact: large subunit ribosomal protein L24e [Arabidopsis thaliana] ref|NP_001078059.1| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp|O22165.1|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb|AAC31838.1| 60S ribosomal prote 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: large subunit ribosomal protein l24e 0.0
Complete
uagpf_v2_unigene16930 uagpf v2.0 1142
AutoFact: ribosomal protein L7Ae-like [Brassica rapa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
uagpf_v2_unigene17094 uagpf v2.0 999
AutoFact: acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor - cucurbit dbj|BAA11117.1| 3-ketoacyl-CoA thiolase [Cucurbita cv. Kurokawa Amakuri] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 3-ketoacyl- thiolase 0.0
N-terminus
uagpf_v2_unigene17161 uagpf v2.0 1182
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
N-terminus
uagpf_v2_unigene17191 uagpf v2.0 508
AutoFact: Elongation factor 2 n=32 Tax=Magnoliophyta RepID=EF2_BETVU 0.0
FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: elongation factor ef-2 0.0
Putative N-terminus
uagpf_v2_unigene17275 uagpf v2.0 882
AutoFact: 40S ribosomal protein S13-1 n=22 Tax=core eudicotyledons RepID=RS131_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s13 0.0
Complete
uagpf_v2_unigene17289 uagpf v2.0 1105
AutoFact: Elongation factor 2 n=32 Tax=Magnoliophyta RepID=EF2_BETVU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: elongation factor ef-2 0.0
C-terminus
uagpf_v2_unigene17351 uagpf v2.0 664
AutoFact: RNA helicase n=1 Tax=Vigna radiata var. radiata RepID=Q9M6R6_VIGRR 0.0
Blast2go: dead-box atp-dependent rna helicase 7-like 0.0
Coding
uagpf_v2_unigene17488 uagpf v2.0 537
AutoFact: 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_192718.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_564434.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|XP_002872461.1| hypothetical protein ARALYDRAFT_489832 [Arabidopsis ly 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pointed first leaf 0.0
N-terminus
uagpf_v2_unigene17527 uagpf v2.0 420
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 9 0.0
Blast2go: dead-box atp-dependent rna helicase 53-like 0.0
Coding
uagpf_v2_unigene17565 uagpf v2.0 843
AutoFact: partner of Y14-mago [Arabidopsis thaliana] ref|NP_849639.1| partner of Y14-mago [Arabidopsis thaliana] ref|NP_001031023.1| partner of Y14-mago [Arabidopsis thaliana] gb|AAF16626.1|AC011661_4 T23J18.7 [Arabidopsis thaliana] gb|AAO42233.1| unknown protein [ 9.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: partner of y14-mago 0.0
C-terminus
uagpf_v2_unigene17587 uagpf v2.0 794
AutoFact: Histone H2A n=1 Tax=Picea sitchensis RepID=A9NTX3_PICSI 4.06377e-44
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone h2a 0.0
Complete
uagpf_v2_unigene17591 uagpf v2.0 409
AutoFact: ribosomal protein L7Ae-like [Brassica rapa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene17656 uagpf v2.0 2033
AutoFact: DEAD BOX RNA helicase RH15-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
uagpf_v2_unigene17659 uagpf v2.0 862
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAC01754.1| putative protein [Arabidopsis thaliana] gb|AAL36367.1| unknown protein [Arabidopsis thaliana] gb|AAM14196.1| unknown protein [Arabidopsis thaliana] gb|AED92176.1| transducin/ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosome biogenesis protein wdr12 homolog 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain