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Assembly Name: biogeco2 v2.0

Name: Zinc finger, C3HC4 RING-type

Term: IPR018957  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene9520 biogeco2 v2.0 436
• AutoFact: E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gb|AAL91211.1| unknown protein [Ar 0.0
• FL-Next: Isoform 2 of E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana GN=HUB2 0.0
Internal
biog2_v2.0_unigene9615 biogeco2 v2.0 717
• AutoFact: NEP1-interacting protein-like 2 [Arabidopsis thaliana] sp|Q8LBA0.2|NIPL2_ARATH RecName: Full=NEP1-interacting protein-like 2; AltName: Full=RING-H2 finger protein ATL24 gb|AAK91449.1| At1g74410/F1M20_9 [Arabidopsis thaliana] gb|AAM10413.1| At1g74410/F1M20 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ring-h2 finger protein atl1q 0.0
N-terminus
biog2_v2.0_unigene9657 biogeco2 v2.0 419
• AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDU7_RICCO 6.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ring finger protein 5.01595e-41
Putative Complete
biog2_v2.0_unigene9658 biogeco2 v2.0 578
• AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM23_MARPO 0.0
• FL-Next: sp=Receptor-like protein kinase THESEUS 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: protein 0.0
Internal
biog2_v2.0_unigene9690 biogeco2 v2.0 432
• AutoFact: putative methyltransferase PMT11 [Arabidopsis thaliana] sp|O22285.1|PMTB_ARATH RecName: Full=Probable methyltransferase PMT11 gb|AAB87124.1| expressed protein [Arabidopsis thaliana] gb|AAK96646.1| At2g39750/T5I7.5 [Arabidopsis thaliana] gb|AAM70566.1| At2 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: probable methyltransferase pmt11-like 0.0
C-terminus
biog2_v2.0_unigene9797 biogeco2 v2.0 328
• AutoFact: Armadillo/beta-catenin repeat protein-like n=2 Tax=Oryza sativa RepID=Q6Z6H7_ORYSJ 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene9958 biogeco2 v2.0 429
• AutoFact: PREDICTED: similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI00019843BD 0.0
• FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: atp-dependent helicase rhp16-like 0.0
Internal
biog2_v2.0_unigene10060 biogeco2 v2.0 334
• AutoFact: Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9SNB4_RICCO 6.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein phosphatase 2c-like protein 1.50142e-30
Internal
biog2_v2.0_unigene10226 biogeco2 v2.0 425
• AutoFact: pfam12819, Malectin_like, Carbohydrate-binding protein of the ER 3.0e-28
• FL-Next: sp=Receptor-like protein kinase THESEUS 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: receptor-like protein kinase theseus 1-like 0.0
Internal
biog2_v2.0_unigene10304 biogeco2 v2.0 417
• AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAL11572.1|AF424578_1 At1g55530/T5A14_7 [Arabidopsis thaliana] gb|AAD10644.1| Unknown protein [Arabidopsis thaliana] gb|AAK62663.1| At1g55530/T5A14_7 [Arabidopsis thaliana] gb|AAN18071.1| At1g 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: e3 ubiquitin-protein ligase ring1-like 0.0
N-terminus
biog2_v2.0_unigene10401 biogeco2 v2.0 417
• AutoFact: zf-rbx1 multi-domain protein 2.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein binding protein 0.0
N-terminus
biog2_v2.0_unigene10458 biogeco2 v2.0 288
• AutoFact: RING-H2 finger protein ATL40 [Arabidopsis thaliana] sp|Q9SLC4.1|ATL40_ARATH RecName: Full=RING-H2 finger protein ATL40 gb|AAD23718.1| putative RING zinc finger protein [Arabidopsis thaliana] gb|AAR24220.1| At2g42350 [Arabidopsis thaliana] gb|AAR92359.1| A 2.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene10549 biogeco2 v2.0 400
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein binding 0.0
Putative C-terminus
biog2_v2.0_unigene10610 biogeco2 v2.0 442
• AutoFact: C3HC4-type RING finger-containing protein [Arabidopsis thaliana] gb|AEC09620.1| C3HC4-type RING finger-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: inter-alpha-trypsin inhibitor heavy chain h3 0.0
C-terminus
biog2_v2.0_unigene10612 biogeco2 v2.0 382
• AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9R796_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein binding 0.0
Internal
biog2_v2.0_unigene10642 biogeco2 v2.0 385
• AutoFact: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9T6X0_RICCO 0.0
• Blast2go: ring-h2 finger protein atl13 0.0
Putative coding
biog2_v2.0_unigene10665 biogeco2 v2.0 397
• AutoFact: protease-associated and C3HC4-type RING finger domain-containing protein [Arabidopsis thaliana] gb|AAL38826.1| unknown protein [Arabidopsis thaliana] gb|AAM91777.1| unknown protein [Arabidopsis thaliana] gb|AEE35260.1| protease-associated and C3HC4-type R 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: e3 ubiquitin-protein ligase rnf167-like 0.0
Internal
biog2_v2.0_unigene10723 biogeco2 v2.0 347
• AutoFact: putative E3 ubiquitin-protein ligase BAH1-like protein [Arabidopsis thaliana] sp|Q8GW10.1|BAH1L_ARATH RecName: Full=Probable E3 ubiquitin-protein ligase BAH1-like; AltName: Full=RING finger protein 178 dbj|BAC43727.1| unknown protein [Arabidopsis thaliana 0.0
• Blast2go: e3 ubiquitin-protein ligase bah1-like protein 0.0
unknown
biog2_v2.0_unigene10735 biogeco2 v2.0 240
• AutoFact: E3 ubiquitin-protein ligase RING1-like protein [Arabidopsis thaliana] sp|Q8LPN7.1|RNG1L_ARATH RecName: Full=E3 ubiquitin-protein ligase RING1-like; AltName: Full=RING finger protein 1 gb|AAM19951.1| AT3g19950/MPN9_19 [Arabidopsis thaliana] gb|AAN18152.1| 1.0e-33
• Blast2go: ring finger protein 0.0
unknown
biog2_v2.0_unigene10770 biogeco2 v2.0 238
• AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974453.1| RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974454.1| RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_001190122.1| RING/U-box domain-con 3.0e-26
• Blast2go: zinc c3hc4 type family protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain