Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene33 biogeco3 v1.0 743
• AutoFact: Homeobox protein, putative n=1 Tax=Ricinus communis RepID=B9R943_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: homeobox-leucine zipper protein hat5-like 0.0
C-terminus
biog3_v1.0_unigene53 biogeco3 v1.0 1053
• AutoFact: TATA-box binding protein [Phaseolus vulgaris] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: tata-binding protein 0.0
Complete
biog3_v1.0_unigene115 biogeco3 v1.0 279
• AutoFact: bZIP transcription factor bZIP28 [Glycine max] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: basic leucine zipper transcription factor-like protein 0.0
Internal
biog3_v1.0_unigene162 biogeco3 v1.0 178
• AutoFact: Ethylene transcription factor n=2 Tax=Fagus sylvatica RepID=Q70AB2_FAGSY 6.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ap2 domain containing protein 2.25605e-23
Internal
biog3_v1.0_unigene170 biogeco3 v1.0 475
• AutoFact: Tubby-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPK2_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: tubby-like f-box protein 3 0.0
C-terminus
biog3_v1.0_unigene187 biogeco3 v1.0 420
• AutoFact: RecName: Full=Squamosa promoter-binding-like protein 15 sp|A2YX04.1|SPL15_ORYSI RecName: Full=Squamosa promoter-binding-like protein 15 dbj|BAD10073.1| putative SPL1-Related2 protein [Oryza sativa Japonica Group] gb|EAZ07615.1| hypothetical protein OsI_29 7.0e-31
• FL-Next: sp=Squamosa promoter-binding-like protein 16; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: squamosa promoter-binding-like protein 14-like 6.92821e-38
Internal
biog3_v1.0_unigene197 biogeco3 v1.0 449
• AutoFact: putative basic-leucine zipper transcription factor bZIP69 [Arabidopsis thaliana] gb|AAF80130.1|AC024174_12 Contains similarity to a b-Zip binding protein from Arabidopsis thaliana gb|Z86093 and contains a b-Zip transcription factor PF|00170 domain. ESTs g 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription factor 21 0.0
C-terminus
biog3_v1.0_unigene390 biogeco3 v1.0 709
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RZ39_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nac domain ipr003441 0.0
Putative C-terminus
biog3_v1.0_unigene449 biogeco3 v1.0 800
• AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] sp|Q9FMS5.1|MS1_ARATH RecName: Full=PHD finger protein MALE STERILITY 1 dbj|BAB08324.1| unnamed protein product [Arabidopsis thaliana] gb|AED93002.1| RING/FYVE/PHD zinc finger-containing 0.0
• FL-Next: sp=PHD finger protein MALE STERILITY 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna binding 0.0
Internal
biog3_v1.0_unigene454 biogeco3 v1.0 479
• AutoFact: Floricaula/leafy-like protein FL1 n=2 Tax=Pinaceae RepID=NEED_PINRA 0.0
• FL-Next: sp=Floricaula/leafy-like protein FL1; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Blast2go: needly-like protein 0.0
Internal
biog3_v1.0_unigene492 biogeco3 v1.0 1339
• AutoFact: Ureidoglycine aminohydrolase n=5 Tax=Brassicaceae RepID=Q8GXV5_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein At4g17050; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: ureidoglycine aminohydrolase 0.0
Complete
biog3_v1.0_unigene548 biogeco3 v1.0 381
• AutoFact: protein kinase [Spinacia oleracea] 0.0
• FL-Next: sp=Phototropin-1A; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: phototropin 2 0.0
Internal
biog3_v1.0_unigene571 biogeco3 v1.0 793
• AutoFact: homeodomain-leucine zipper protein 56 [Glycine max] 8.00001e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: homeobox-leucine zipper protein athb-6-like 0.0
Putative N-terminus
biog3_v1.0_unigene612 biogeco3 v1.0 337
• AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription factor bhlh62-like 0.0
Internal
biog3_v1.0_unigene707 biogeco3 v1.0 677
• AutoFact: transcription factor TCP4 [Arabidopsis thaliana] ref|NP_850589.1| transcription factor TCP4 [Arabidopsis thaliana] ref|NP_001189896.1| transcription factor TCP4 [Arabidopsis thaliana] sp|Q8LPR5.1|TCP4_ARATH RecName: Full=Transcription factor TCP4; AltName 9.0e-34
• Blast2go: transcription factor tcp4 4.49701e-39
Putative coding
biog3_v1.0_unigene795 biogeco3 v1.0 558
• AutoFact: mediator of RNA polymerase II transcription subunit 31 [Arabidopsis thaliana] sp|Q8VYB1.1|MED31_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 31; AltName: Full=Mediator complex subunit 31; AltName: Full=Mediator complex subunit S 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: mediator of rna polymerase ii transcription subunit 31 0.0
N-terminus
biog3_v1.0_unigene806 biogeco3 v1.0 1104
• AutoFact: Phytochrome n=1 Tax=Marchantia paleacea var. diptera RepID=Q9AVP3_MARPA 0.0
• FL-Next: sp=Phytochrome; Pinus sylvestris (Scots pine). 0.0
• Blast2go: phytochrome 0.0
C-terminus
biog3_v1.0_unigene890 biogeco3 v1.0 694
• AutoFact: Homeobox 1 n=1 Tax=Picea abies RepID=Q9FR59_PICAB 0.0
• FL-Next: tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Blast2go: homeobox-leucine zipper protein hdg2-like 0.0
C-terminus
biog3_v1.0_unigene1001 biogeco3 v1.0 441
• AutoFact: Ethylene response factor 1 n=1 Tax=Cucumis sativus RepID=Q5S004_CUCSA 4.0e-14
• Blast2go: ethylene-responsive element binding factor-like protein 1.6707e-15
unknown
biog3_v1.0_unigene1037 biogeco3 v1.0 747
• AutoFact: ZF-HD homeobox protein [Arabidopsis thaliana] sp|Q9SB61.1|Y4466_ARATH RecName: Full=ZF-HD homeobox protein At4g24660; Short=AtHB-22 gb|AAL27510.1|AF439841_1 AT4g24660/F22K18_140 [Arabidopsis thaliana] emb|CAA22997.1| putative protein [Arabidopsis thaliana 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zf-hd homeobox protein at4g24660-like 1.56549e-30
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain