Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: protein binding

Term: GO:0005515  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene22790 biogeco3 v1.0 314
• AutoFact: nucleoprotein TPR [Arabidopsis thaliana] sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gb|AEE36226.1| nucleoprotein TPR [A 2.0e-15
• FL-Next: sp=Nuclear-pore anchor; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nucleoprotein tpr 2.59187e-17
Internal
biog3_v1.0_unigene22813 biogeco3 v1.0 378
• AutoFact: Putative WEE1 kinase n=1 Tax=Nicotiana tabacum RepID=B6GV50_TOBAC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: wee1-like protein kinase 0.0
Internal
biog3_v1.0_unigene22859 biogeco3 v1.0 204
• AutoFact: vacuolar protein sorting-associated protein VTA1 [Arabidopsis thaliana] emb|CAB36521.1| putative protein [Arabidopsis thaliana] emb|CAB79530.1| putative protein [Arabidopsis thaliana] gb|AAK82482.1| AT4g26750/F10M23_90 [Arabidopsis thaliana] gb|AAM16165.1 0.0
• Blast2go: protein 0.0
Coding
biog3_v1.0_unigene22899 biogeco3 v1.0 173
• AutoFact: BTB domain containing protein 2.0e-05
• Blast2go: eto1-like protein 1-like 0.0
unknown
biog3_v1.0_unigene22905 biogeco3 v1.0 294
• AutoFact: transcription initiation factor TFIIH subunit H1 [Arabidopsis thaliana] sp|Q3ECP0.1|TFB1A_ARATH RecName: Full=Probable RNA polymerase II transcription factor B subunit 1-1; AltName: Full=General transcription and DNA repair factor IIH subunit TFB1-1; Shor 1.0e-26
• FL-Next: Isoform 2 of Probable RNA polymerase II transcription factor B subunit 1-3 OS=Arabidopsis thaliana GN=TFB1-3 0.0
• Blast2go: transcription initiation factor tfiih subunit h1 1.22333e-42
Internal
biog3_v1.0_unigene22911 biogeco3 v1.0 319
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RGA8_RICCO 2.0e-22
• FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: the plant-specific rna polymerase iv largest subunit-like protein 3.12698e-22
Internal
biog3_v1.0_unigene22969 biogeco3 v1.0 239
• AutoFact: Histidine kinase 1 plant, putative n=1 Tax=Ricinus communis RepID=B9SUH7_RICCO 8.00001e-41
• Blast2go: histidine kinase osmosensor protein 4.2039e-45
unknown
biog3_v1.0_unigene22990 biogeco3 v1.0 167
• AutoFact: pfam01657, DUF26, Domain of unknown function DUF26 4.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: cysteine-rich repeat secretory protein 15-like 0.0
Internal
biog3_v1.0_unigene23014 biogeco3 v1.0 316
• AutoFact: E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] ref|NP_001119465.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb|AED97324.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb|AED97328.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] 4.0e-13
• FL-Next: Isoform 2 of E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 0.0
• Blast2go: e3 sumo-protein ligase siz1 7.97658e-17
Internal
biog3_v1.0_unigene23036 biogeco3 v1.0 343
• AutoFact: Ras-related protein Rab-2-B n=15 Tax=Magnoliophyta RepID=RAB2B_MAIZE 0.0
• Blast2go: ras-related protein rab-2-a 0.0
unknown
biog3_v1.0_unigene23054 biogeco3 v1.0 192
• AutoFact: CBL-interacting protein kinase 03 n=2 Tax=Selaginella moellendorffii RepID=C4P7R5_SELML 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog3_v1.0_unigene23063 biogeco3 v1.0 205
• AutoFact: Actin related protein n=1 Tax=Populus trichocarpa RepID=B9IMW6_POPTR 2.0e-31
• Blast2go: actin-related protein 6 2.8125e-36
unknown
biog3_v1.0_unigene23099 biogeco3 v1.0 338
• AutoFact: cleavage/polyadenylation specificity factor [Arabidopsis thaliana] dbj|BAC42701.1| unknown protein [Arabidopsis thaliana] gb|AAO63939.1| unknown protein [Arabidopsis thaliana] dbj|BAF00402.1| hypothetical protein [Arabidopsis thaliana] gb|AEE85076.1| clea 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: cleavage and polyadenylation specificity factor 5 0.0
C-terminus
biog3_v1.0_unigene23114 biogeco3 v1.0 289
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna polymerase iv second largest subunit 0.0
Putative N-terminus
biog3_v1.0_unigene23133 biogeco3 v1.0 192
• AutoFact: DUF593 domain containing protein 5.0e-35
• Blast2go: uncharacterized protein 4.90934e-32
unknown
biog3_v1.0_unigene23157 biogeco3 v1.0 284
• AutoFact: Nucleoporin 98 n=1 Tax=Daucus carota RepID=A9ZP15_DAUCA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleoporin autopeptidase 0.0
Putative C-terminus
biog3_v1.0_unigene23189 biogeco3 v1.0 271
• AutoFact: Nucleoporin n=1 Tax=Lotus japonicus RepID=Q2UY13_LOTJA 4.0e-35
• FL-Next: tr=Nucleoporin; Lotus japonicus. 0.0
• Blast2go: nup133 nup155-like protein 8.68287e-41
Internal
biog3_v1.0_unigene23216 biogeco3 v1.0 141
• AutoFact: cullin-associated NEDD8-dissociated protein 1 [Arabidopsis thaliana] sp|Q8L5Y6.1|CAND1_ARATH RecName: Full=Cullin-associated NEDD8-dissociated protein 1; AltName: Full=Cullin-associated and neddylation-dissociated protein 1; Short=AtCAND1; AltName: Full=P 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog3_v1.0_unigene23239 biogeco3 v1.0 340
• AutoFact: Nucleoporin 98 n=1 Tax=Daucus carota RepID=A9ZP15_DAUCA 0.0
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: nucleoporin autopeptidase 0.0
Internal
biog3_v1.0_unigene23251 biogeco3 v1.0 347
• AutoFact: Thioredoxin reductase n=1 Tax=Picea sitchensis RepID=B8LPW6_PICSI 0.0
• FL-Next: sp=Thioredoxin reductase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nadph-dependent thioredoxin reductase 3-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain