SoleaDB

Assembly Name: Solea senegalensis v4.1 (global assembly)

UniGene Name: solea_v4.1_unigene4

Length: 2026 nt

UniGene Fasta

>solea_v4.1_unigene4
AGGGAGAAAGTACTCTGTCTGGATCGGCGGGTCTATCCTGGCCTCCCTCTCCACCTTCCAGCAGATGTGGATCAGCAAACACGAGTATGATGAGTCCGGCCCCTCCATCGTCCACCGCAAGTGCTTCTAGATGTATGGGGCGTTTGCCTCAAGTTAAACACGCTGGTTCAAGTATCATCTCCCTGGAAATTCTCCCAATCTTCACGAATGGACAAAAAGTATAAAATGCTATTGAGAATATCCAGGCAACTGATTAGGGGTTTTTCAGCTTGGTTGTTAAAGCACTACTCTGCTCTATCTGACCCTGTCACTGTGACCTCAACAATAAATGCCAAGATATGATTGTTTACAGCTTCTGGTGTTTGTTAGATTTAATGGGATTTACTGTACTTGCATTTTATACTTCTTCTGATGACAGACCGCATGTCCAGTTGTGAGGGAAACAAATGGCTAATGGGCTCATATGGTGATATCTTATAATTAGAACTGAATTCAGTTATAATTGTCTCCAAAGGTCTCTGTAATCAAGGGAAATTAGAACTCAGTTATCCGGGTTCCCTGCAAATTCAATATTTCTATATTGTACACGACCTTAATTGCAAACTTGTATTAAAACAAAAGTTTCACTTTAGAGTTCAGTATGGTGACAACAAAAACCTGTTCAACATTCCAGTAAGGATTCTAATGGGCCACTAACATCTGCCTCAGGGCAGGAGCTAAAACTGTTTCTTTTGAGATACCTGATTTCTGGGCGGTGAAGTTCACAGGGCAGTTTATTTTGTTTGCAGAGATGTTACCATACCACACCGGGACGCTGTTGCACAGGGGAAAAAAAAAAAACCTGTGTACTGAAAGAAAGTGTCATCACTTTCTGGCATAATGTTTTGCATGTTTGCCAAGCCCCAGGCTGAGAAGACACGAACATGTAAAGCGAGGTCTGAATTTGGGGTATAATTTATAGTAATGAAGGGCAACCTTTCGTACCAACCTAACAATTTGACTGTTTTATGGACGGGAGATGTGACAAACAATCCCTTTTAGGTTTCCACGTCAGCATTTTATGAAAGTTCACAAAATATACAGAACAGATACATGCAAAAATAATTTTACAAGCAAACAAATCAAGTGTTGCCATGCTGTACAAAAGTATTCAATTGCATCAGTTGTCAAAGCTTATTTTTTAGTCCTTCCAGTCATTCCTTTTTTATTAATGTGGAATTTTCCTAAAAATAAAGTTCTACAGAGAAAATCTCTCATTGTCAGCAAAATGTCTTTCTTTCAGCTGAATAATATGACCAGTTTTCCTGAAAATAGTTTTGAACATCCAGAACATTTTAGAATGTGTATAATGATAAAATAAATTAGGAATTGTTTCATTTATGATGAGATCATCAATTTTATTACATTACATTTAGAATGAAACTTGCCATAGGTTAGCAGTTGATCAGCCTTCTAATACCCTCTTCTACCCAATCCTTTTTTTTATTGAATACTCCTGTTATTCCATGTGTAGAAGTTATTTGGTGAAACATTATGCTTGTATAGCATTTCCCATGCCAGCAGAGGTTGCTTATGGAAGTTTGCTAATCTCACAGGTAACTTCAATTTTATAGTCATATTTTAACAGAAATTCAAGACCTCCAATTTTATTAAATATGGATTTAGGTAAAGTGTTCCAAATATTAACCATTTAACTTTGAAAGTGATAAACATTTGAAATGATGTACTTCCAGACTACCATTTCTTCTAGTGTTGCATAGAATGTCTTTCTTTCAGTAATGGCATTTGTTCCTCCAGATGAAATTGTGTAACATGTTTCTTGTATATTTCAGTAGGCATTCCCAGTGATAATGACACATAAACAGCTTGTGATATCCCCTCAGCTTTAGAAAGTAAAACTCCCATTCATTACATTACATTACATGTCATTTAGCAGACATTTTTATCCAAAGCGACTAACAATAAGCGCATTTAAAAATTTGGGAACAACGTGCTTGAAGTAAGTAAGAGCTTCAAGTAAGCCAAG

Annotations

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica).	-	-	9.0e-18	97%
AutoFact	PREDICTED: actin, cytoplasmic 2-like isoform 3 n=2 Tax=Callithrix jacchus RepID=UPI0001D36C02	-	-	5.0e-15	97%

Source	Species	ID	Description	e value	Identity
RefSeq	Danio rerio	NP_853632	actin, cytoplasmic 2	2.0e-18	97%
Ensembl	Danio rerio	ENSDARP00000122263	-	2.0e-18	97%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: actinopterygii.fasta

Fln subject: I3J521

Fln msg: Unexpected STOP codon at 3' end. your sequence is shorter than subject: 43 - 405

Fln protein: GRKYSVWIGGSILASLSTFQQMWISKHEYDESGPSIVHRKCF*

Protein Length: 43

Fln nts: AGGGAGAAAGTACTCTGTCTGGATCGGCGGGTCTATCCTGGCCTCCCTCTCCACCTTCCAGCAGATGTGGATCAGCAAACACGAGTATGATGAGTCCGGCCCCTCCATCGTCCACCGCAAGTGCTTCTAGATGGTATGGGGCGTTTGCCTCAAGTTAAACACGCTGGTTCAAGTATCATCTCCCTGGAAATTCTCCCAATCTTCACGAATGGACAAAAAGTATAAAATGCTATTGAGAATATCCAGGCAACTGATTAGGGGTTTTTCAGCTTGGTTGTTAAAGCACTACTCTGCTCTATCTGACCCTGTCACTGTGACCTCAACAATAAATGCCAAGATATGATTGTTTACAGCTTCTGGTGTTTGTTAGATTTAATGGGATTTACTGTACTTGCATTTTATACTTCTTCTGATGACAGACCGCATGTCCAGTTGTGAGGGAAACAAATGGCTAATGGGCTCATATGGTGATATCTTATAATTAGAACTGAATTCAGTTATAATTGTCTCCAAAGGTCTCTGTAATCAAGGGAAATTAGAACTCAGTTATCCGGGTTCCCTGCAAATTCAATATTTCTATATTGTACACGACCTTAATTGCAAACTTGTATTAAAACAAAAGTTTCACTTTAGAGTTCAGTATGGTGACAACAAAAACCTGTTCAACATTCCAGTAAGGATTCTAATGGGCCACTAACATCTGCCTCAGGGCAGGAGCTAAAACTGTTTCTTTTGAGATACCTGATTTCTGGGCGGTGAAGTTCACAGGGCAGTTTATTTTGTTTGCAGAGATGTTACCATACCACACCGGGACGCTGTTGCACAGGGGAAAAAAAAAAAACCTGTGTACTGAAAGAAAGTGTCATCACTTTCTGGCATAATGTTTTGCATGTTTGCCAAGCCCCAGGCTGAGAAGACACGAACATGTAAAGCGAGGTCTGAATTTGGGGTATAATTTATAGTAATGAAGGGCAACCTTTCGTACCAACCTAACAATTTGACTGTTTTATGGACGGGAGATGTGACAAACAATCCCTTTTAGGTTTCCACGTCAGCATTTTATGAAAGTTCACAAAATATACAGAACAGATACATGCAAAAATAATTTTACAAGCAAACAAATCAAGTGTTGCCATGCTGTACAAAAGTATTCAATTGCATCAGTTGTCAAAGCTTATTTTTTAGTCCTTCCAGTCATTCCTTTTTTATTAATGTGGAATTTTCCTAAAAATAAAGTTCTACAGAGAAAATCTCTCATTGTCAGCAAAATGTCTTTCTTTCAGCTGAATAATATGACCAGTTTTCCTGAAAATAGTTTTGAACATCCAGAACATTTTAGAATGTGTATAATGATAAAATAAATTAGGAATTGTTTCATTTATGATGAGATCATCAATTTTATTACATTACATTTAGAATGAAACTTGCCATAGGTTAGCAGTTGATCAGCCTTCTAATACCCTCTTCTACCCAATCCTTTTTTTTATTGAATACTCCTGTTATTCCATGTGTAGAAGTTATTTGGTGAAACATTATGCTTGTATAGCATTTCCCATGCCAGCAGAGGTTGCTTATGGAAGTTTGCTAATCTCACAGGTAACTTCAATTTTATAGTCATATTTTAACAGAAATTCAAGACCTCCAATTTTATTAAATATGGATTTAGGTAAAGTGTTCCAAATATTAACCATTTAACTTTGAAAGTGATAAACATTTGAAATGATGTACTTCCAGACTACCATTTCTTCTAGTGTTGCATAGAATGTCTTTCTTTCAGTAATGGCATTTGTTCCTCCAGATGAAATTGTGTAACATGTTTCTTGTATATTTCAGTAGGCATTCCCAGTGATAATGACACATAAACAGCTTGTGATATCCCCTCAGCTTTAGAAAGTAAAACTCCCATTCATTACATTACATTACATGTCATTTAGCAGACATTTTTATCCAAAGCGACTAACAATAAGCGCATTTAAAAATTTGGGAACAACGTGCTTGAAGTAAGTAAGAGCTTCAAGTAAGCCAAG

Fln Alignment:

solea_v4.0_unigene4___RKYSVWIGGSILASLSTFQQMWISKHEYDESGPSIVHRKCF
I3J521______________RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF

SSRs (tot: 1)

Start position	End position	Sequence	Length
1907	1924	CATTA CATTA CATTA CAT	18

Curation

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