| General Information |
| Organism: |
Solea Senegalensis |
| Tissue: |
several |
| Description: |
complete assembly of Solea senegalensis. Include sequences from CIT, MMC, gonads, hypophysis, hypothalamus and Illumina reads.
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| Assembly Statistics |
|
| Number of used reads: |
1565191226 |
| Number of unigenes: |
694279 |
| Mean contig length: |
511 |
| SNPs statistics |
|
| Tot. SNPs: |
337093 |
| Unigenes with SNPs: |
151764 |
| Mean SNPs per unigene: |
2.2 |
| SSRs statistics |
|
| Tot. SSRs: |
266434 |
| Mean SSRs per unigene: |
1.6 |
| SSRs di-nucl. : |
107828 |
| SSRs tri-nucl. : |
96076 |
| SSRs > tri-nucl. : |
62530 |
| Annotations statistics |
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| Annotated unigenes: |
173018 |
| Descriptions: |
66557 |
| Gos: |
9071 |
| Interpros: |
8827 |
| ECs: |
1054 |
| Keggs: |
118 |
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| Project components |
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| Assembly components: |
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| Unigenes file: |
solea_v4.1_unigenes.fasta |
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| Ref. transcriptome: |
solea_v4.1_representative.fasta |
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| Download annotations for reference transcriptome: |
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| Ref. tranc. annotation file: |
solea_v4.1_rep_annot_file.txt |
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| Download annotations for specified unigenes: |
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| SRAs: |
| File 1: |
PRJNA241068 |
Download(NCBI)
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| SFFs: |
| File 1: |
GF2IHIN01.sff |
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| File 2: |
GF2IHIN02.sff |
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| File 3: |
GH96IJU01.sff |
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| File 4: |
GH96IJU02.sff |
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| File 5: |
GG3IVWD04.sff |
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| File 6: |
GHU87WB01.sff |
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| File 7: |
GHU87WB02.sff |
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| File 8: |
GG3IVWD02.sff |
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| File 9: |
G917EGR01.sff |
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| File 10: |
G917EGR02.sff |
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| File 11: |
HCBOKFV01.sff |
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| File 12: |
HD90K6R01.sff |
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| File 13: |
HD90K6R02.sff |
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| File 14: |
HCBOKFV02.sff |
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| | |
| SeqTrimNext reports: |
| | |
| File 1: |
GF2IHIN01_report.pdf |
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| File 2: |
GF2IHIN02_report.pdf |
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| File 3: |
GH96IJU01_report.pdf |
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| File 4: |
GH96IJU02_report.pdf |
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| File 5: |
GG3IVWD04_report.pdf |
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| File 6: |
GHU87WB01_report.pdf |
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| File 7: |
GHU87WB02_report.pdf |
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| File 8: |
GG3IVWD02_report.pdf |
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| File 9: |
G917EGR01_report.pdf |
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| File 10: |
G917EGR02_report.pdf |
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| File 11: |
HCBOKFV01_report.pdf |
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| File 12: |
HD90K6R01_report.pdf |
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| File 13: |
HD90K6R02_report.pdf |
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| File 14: |
HCBOKFV02_report.pdf |
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