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Welcome to Solea DB

SoleaDB is a transcriptome database for Senegalese sole (Solea senegalensis) and common sole (Solea solea). This database includes the assemblies and annotation of new genomic resources generated from different tissues, developmental stages or stimuli treatments using NGS technologies. The information here provided represents a valuable information resource to boost research and aquaculture of these sole species. This database will be updated periodically with new transcriptomic information from NGS. Moreover, further studies for genome analysis and SNPs identification are ongoing.


Contact: Mmmail

Web interface: V1.2

Current Release:
Solea senegalensis v.4.1 2014-01-23
Solea solea v.1.1 2014-02-27

- SeqTrimNext v0.9a1
- BLAST+ v2.2.25+
- AutoFact v3.4 customised
- Full-LengtherNext
- Sma3
- GigaBayes
- Samtools v0.1.19
- Mreps v2.5

Benzekri, H., Armesto, P., Cousin, X., Rovira, M., Crespo, D., Merlo, M.A., Mazurais, D., Bautista, R., Guerrero-Fernandez, D., Fernandez-Pozo, N., Ponce, M., Infante, C., Zambonino, J.L., Nidelet, S., Gut, M., Rebordinos, L., Planas, J.V., Begout, M.L., Claros, M.G., Manchado, M., 2014. De novo assembly, characterization and functional annotation of Senegalese sole (Solea senegalensis) and common sole (Solea solea) transcriptomes: integration in a database and design of a microarray. BMC Genomics 15, 952.
Last News: 2014-02-27 Solea solea has been updated to the version 1.1



IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain