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Assembly pipeline

Solea senegalensis v4

Db_pipeline2

Solea solea v1

Db_pipeline3

Solea senegalensis v3

Db_pipeline1






Current Release:
Solea senegalensis v.4.1 2014-01-23
Solea solea v.1.1 2014-02-27

Software:
- SeqTrimNext v0.9a1
- BLAST+ v2.2.25+
- AutoFact v3.4 customised
- Full-LengtherNext
- Sma3
- GigaBayes
- Samtools v0.1.19
- Mreps v2.5

HOW TO CITE
Benzekri, H., Armesto, P., Cousin, X., Rovira, M., Crespo, D., Merlo, M.A., Mazurais, D., Bautista, R., Guerrero-Fernandez, D., Fernandez-Pozo, N., Ponce, M., Infante, C., Zambonino, J.L., Nidelet, S., Gut, M., Rebordinos, L., Planas, J.V., Begout, M.L., Claros, M.G., Manchado, M., 2014. De novo assembly, characterization and functional annotation of Senegalese sole (Solea senegalensis) and common sole (Solea solea) transcriptomes: integration in a database and design of a microarray. BMC Genomics 15, 952.
Last News: 2014-02-27 Solea solea has been updated to the version 1.1

FUNDING SUPPORT





Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain