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Assembly Name: Solea senegalensis v4.1 (global assembly)

Name: collagen biosynthetic process

Term: GO:0032964  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
solea_v4.1_unigene93 Solea senegalensis v4.1 (global assembly) 4067
• FL-Next: tr=Collagen type I alpha 1; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Collagen type I alpha 2 2.668e-16
• AutoFact: Type 1 collagen alpha 1 n=1 Tax=Paralichthys olivaceus RepID=Q5NT96_PAROL 0.0
Putative C-terminus
solea_v4.1_unigene94 Solea senegalensis v4.1 (global assembly) 4067
• FL-Next: tr=Collagen type I alpha 1; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Collagen type I alpha 2 2.731e-16
• AutoFact: Type 1 collagen alpha 1 n=1 Tax=Paralichthys olivaceus RepID=Q5NT96_PAROL 0.0
Putative C-terminus
solea_v4.1_unigene99 Solea senegalensis v4.1 (global assembly) 6140
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Collagen type I alpha 2 3.272e-16
• AutoFact: Type 1 collagen alpha 2 n=1 Tax=Paralichthys olivaceus RepID=Q5NT95_PAROL 0.0
Putative Complete
solea_v4.1_unigene2114 Solea senegalensis v4.1 (global assembly) 4670
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Uncharacterized protein 4.805e-10
• AutoFact: col15a1l, col15a1, sb:cb605; collagen, type XV, alpha 1, like 0.0
Putative C-terminus
solea_v4.1_unigene2368 Solea senegalensis v4.1 (global assembly) 8289
• FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• Sma3: Uncharacterized protein 1.204e-16
• AutoFact: COL4A3; collagen, type IV, alpha 3 0.0
Putative Complete
solea_v4.1_unigene2442 Solea senegalensis v4.1 (global assembly) 3549
• FL-Next: tr=Uncharacterized protein; Takifugu rubripes (Japanese pufferfish) (Fugu rubripes). 0.0
• Sma3: Uncharacterized protein 8.577e-21
• AutoFact: col6a1; collagen, type VI, alpha 1; K06238 collagen, type VI, alpha 0.0
Putative C-terminus
solea_v4.1_unigene2498 Solea senegalensis v4.1 (global assembly) 8099
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Uncharacterized protein 3.431e-12
Putative C-terminus
solea_v4.1_unigene3111 Solea senegalensis v4.1 (global assembly) 4119
• FL-Next: tr=Uncharacterized protein; Takifugu rubripes (Japanese pufferfish) (Fugu rubripes). 7.0e-16
• Sma3: Uncharacterized protein 1.573e-20
• AutoFact: col4a6; collagen, type IV, alpha 6; K06237 collagen, type IV, alpha 0.0
Putative C-terminus
solea_v4.1_unigene4202 Solea senegalensis v4.1 (global assembly) 3804
• FL-Next: tr=Uncharacterized protein; Gasterosteus aculeatus (Three-spined stickleback). 0.0
• Sma3: Uncharacterized protein 3.704e-14
• AutoFact: col6a3, wu:fb06e12, wu:fs74g09; collagen, type VI, alpha 3 0.0
Internal
solea_v4.1_unigene4203 Solea senegalensis v4.1 (global assembly) 6196
• FL-Next: tr=Uncharacterized protein; Gasterosteus aculeatus (Three-spined stickleback). 0.0
• Sma3: Uncharacterized protein 1.408e-13
• AutoFact: col6a3, wu:fb06e12, wu:fs74g09; collagen, type VI, alpha 3 0.0
Internal
solea_v4.1_unigene4204 Solea senegalensis v4.1 (global assembly) 6034
• FL-Next: tr=Uncharacterized protein; Gasterosteus aculeatus (Three-spined stickleback). 0.0
• Sma3: Uncharacterized protein 1.802e-13
• AutoFact: col6a3, wu:fb06e12, wu:fs74g09; collagen, type VI, alpha 3 0.0
Internal
solea_v4.1_unigene6278 Solea senegalensis v4.1 (global assembly) 1420
• FL-Next: tr=Collagen alpha-1XIII chain; Salmo salar (Atlantic salmon). 2.0e-21
• Sma3: Uncharacterized protein 3.18e-18
• AutoFact: Collagen alpha-1XIII chain n=1 Tax=Salmo salar RepID=C0H9S7_SALSA 4.0e-32
Putative N-terminus
solea_v4.1_unigene6561 Solea senegalensis v4.1 (global assembly) 2872
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 1.0e-11
• Sma3: Uncharacterized protein 3.098e-15
• AutoFact: EMID2; EMI domain containing 2 1.4013e-45
Putative Complete
solea_v4.1_unigene7369 Solea senegalensis v4.1 (global assembly) 3522
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Uncharacterized protein 1.902e-18
• AutoFact: Collagen type V alpha-3a n=6 Tax=Danio rerio RepID=D6MUD6_DANRE 0.0
N-terminus
solea_v4.1_unigene15247 Solea senegalensis v4.1 (global assembly) 1497
• FL-Next: tr=Uncharacterized protein; Takifugu rubripes (Japanese pufferfish) (Fugu rubripes). 0.0
• Sma3: Collagen type I alpha 2 1.754e-16
• AutoFact: Type 1 collagen alpha 1 n=1 Tax=Paralichthys olivaceus RepID=Q5NT96_PAROL 0.0
Putative C-terminus
solea_v4.1_unigene20846 Solea senegalensis v4.1 (global assembly) 443
• Sma3: Uncharacterized protein 5.507e-24
• AutoFact: col28a1, col28a1c, si:ch211-174d12.1, si:ch211-174d12.4; collagen, type XXVIII, alpha 1 5.0e-09
Coding
solea_v4.1_unigene22277 Solea senegalensis v4.1 (global assembly) 2751
• FL-Next: tr=Uncharacterized protein; nigroviridis). 0.0
• Sma3: Uncharacterized protein 3.579e-19
• AutoFact: Collagen type X alpha 1 (Fragment) n=1 Tax=Epinephelus coioides RepID=D6PVR0_EPICO 0.0
Complete
solea_v4.1_unigene22800 Solea senegalensis v4.1 (global assembly) 3750
• FL-Next: tr=Uncharacterized protein; Oryzias latipes (Medaka fish) (Japanese ricefish). 0.0
• Sma3: Uncharacterized protein 2.06e-09
• AutoFact: Col19a1; collagen, type XIX, alpha 1 0.0
Putative C-terminus
solea_v4.1_unigene24385 Solea senegalensis v4.1 (global assembly) 1804
• FL-Next: tr=Collagen alpha-1XIII chain; Salmo salar (Atlantic salmon). 4.0e-31
• Sma3: Uncharacterized protein 3.025e-19
• AutoFact: COL13A1; collagen, type XIII, alpha 1 1.99965e-42
Putative C-terminus
solea_v4.1_unigene25865 Solea senegalensis v4.1 (global assembly) 3667
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Uncharacterized protein 1.689e-13
• AutoFact: novel collagen protein-like 0.0
Putative C-terminus

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain