Logo_sudoe_cb Cabecera_solea2 Img_right
HomeAssembliesBLASTSearchInstitutions

Assembly Name: Solea senegalensis v4.1 (global assembly)

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
solea_v4.1_unigene74 Solea senegalensis v4.1 (global assembly) 4920
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Hnrnpu protein 1.902e-13
• AutoFact: hnrnpul1, hnrpul1, wu:fb53d10, wu:fk45c03, zgc:85971; heterogeneous nuclear ribonucleoprotein U-like 1 0.0
Putative C-terminus
solea_v4.1_unigene75 Solea senegalensis v4.1 (global assembly) 5704
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 5.0e-40
• Sma3: Hnrnpu protein 2.166e-13
• AutoFact: hnrnpul1, hnrpul1, wu:fb53d10, wu:fk45c03, zgc:85971; heterogeneous nuclear ribonucleoprotein U-like 1 0.0
Putative Complete
solea_v4.1_unigene95 Solea senegalensis v4.1 (global assembly) 3238
• FL-Next: tr=Uncharacterized protein; Gasterosteus aculeatus (Three-spined stickleback). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: Cyclin L1 n=1 Tax=Oncorhynchus mykiss RepID=Q64HW7_ONCMY 0.0
Putative Complete
solea_v4.1_unigene123 Solea senegalensis v4.1 (global assembly) 3782
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Pre-mRNA-processing factor 39 7.25e-18
• AutoFact: Pre-mRNA-processing factor 39 n=1 Tax=Salmo salar RepID=C0H9W3_SALSA 0.0
Putative Complete
solea_v4.1_unigene173 Solea senegalensis v4.1 (global assembly) 1681
• AutoFact: PRP38_assoc multi-domain protein 3.0e-07
unknown
solea_v4.1_unigene382 Solea senegalensis v4.1 (global assembly) 3023
• FL-Next: tr=Uncharacterized protein; Gasterosteus aculeatus (Three-spined stickleback). 0.0
• AutoFact: Novel protein n=2 Tax=Danio rerio RepID=A5PN19_DANRE 0.0
Putative C-terminus
solea_v4.1_unigene586 Solea senegalensis v4.1 (global assembly) 1754
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 4.0e-10
• AutoFact: DUF1777 multi-domain protein 3.0e-15
Putative C-terminus
solea_v4.1_unigene705 Solea senegalensis v4.1 (global assembly) 1208
• FL-Next: tr=Uncharacterized protein; Oryzias latipes (Medaka fish) (Japanese ricefish). 0.0
• Sma3: Cold-inducible RNA-binding protein 8.795e-11
• AutoFact: PREDICTED: transformer-2 protein homolog beta-like n=2 Tax=Amniota RepID=UPI000203606F 0.0
Putative Complete
solea_v4.1_unigene2943 Solea senegalensis v4.1 (global assembly) 4178
• FL-Next: sp=ATP-dependent RNA helicase DDX1; Xenopus laevis (African clawed frog). 2.0e-07
• Sma3: Hnrnpu protein 1.585e-13
• AutoFact: hnrnpu, MGC111835, MGC136480, hnrpu, wu:fa66f11, wu:fc18b08, wu:fi89c08, zgc:111835, zgc:136480; heterogeneous nuclear ribonucleoprotein U 0.0
Putative Complete
solea_v4.1_unigene3316 Solea senegalensis v4.1 (global assembly) 3916
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Pre-mRNA-processing factor 39 9.773e-23
• AutoFact: Pre-mRNA-processing factor 39 n=1 Tax=Salmo salar RepID=C0H9W3_SALSA 0.0
Putative Complete
solea_v4.1_unigene3333 Solea senegalensis v4.1 (global assembly) 4337
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Cyclin-L1 1.684e-18
• AutoFact: Isoform 2 of Cyclin-L1 n=2 Tax=Homininae RepID=Q9UK58-4 0.0
Putative Complete
solea_v4.1_unigene4514 Solea senegalensis v4.1 (global assembly) 2713
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: [OJ] COG5193 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation 6.0e-05
Complete
solea_v4.1_unigene4681 Solea senegalensis v4.1 (global assembly) 4167
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Zinc finger RNA-binding protein 2.727e-15
• AutoFact: Interleukin enhancer-binding factor 3 homolog n=2 Tax=Salmo salar RepID=B5X1E6_SALSA 0.0
Putative Complete
solea_v4.1_unigene6020 Solea senegalensis v4.1 (global assembly) 2952
• FL-Next: tr=Uncharacterized protein; Takifugu rubripes (Japanese pufferfish) (Fugu rubripes). 0.0
• Sma3: Uncharacterized protein 0.0
• AutoFact: Adenosine deaminase n=6 Tax=Tetraodontidae RepID=Q8AWG5_TAKRU 0.0
Putative Complete
solea_v4.1_unigene6459 Solea senegalensis v4.1 (global assembly) 2234
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: La-related protein 7 7.178e-09
• AutoFact: La protein homolog n=1 Tax=Osmerus mordax RepID=C1BM58_OSMMO 0.0
Putative Complete
solea_v4.1_unigene6990 Solea senegalensis v4.1 (global assembly) 3080
• FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
• Sma3: Uncharacterized protein 1.216e-12
• AutoFact: PREDICTED: transmembrane and TPR repeat-containing protein 1-like n=1 Tax=Monodelphis domestica RepID=UPI00020F747B 0.0
Putative Complete
solea_v4.1_unigene7873 Solea senegalensis v4.1 (global assembly) 880
• Sma3: Tropoelastin 1 1.078e-09
• AutoFact: Drf_FH1 multi-domain protein 4.0e-29
Coding
solea_v4.1_unigene10870 Solea senegalensis v4.1 (global assembly) 3548
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Hnrnpu protein 2.416e-13
• AutoFact: hnrnpu, MGC111835, MGC136480, hnrpu, wu:fa66f11, wu:fc18b08, wu:fi89c08, zgc:111835, zgc:136480; heterogeneous nuclear ribonucleoprotein U 0.0
Putative C-terminus
solea_v4.1_unigene10871 Solea senegalensis v4.1 (global assembly) 4426
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Hnrnpu protein 2.568e-13
• AutoFact: hnrnpu, MGC111835, MGC136480, hnrpu, wu:fa66f11, wu:fc18b08, wu:fi89c08, zgc:111835, zgc:136480; heterogeneous nuclear ribonucleoprotein U 0.0
Putative Complete
solea_v4.1_unigene11255 Solea senegalensis v4.1 (global assembly) 3433
• FL-Next: tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
• Sma3: Pre-mRNA-processing factor 39 8.531e-23
• AutoFact: [R] COG0457 FOG: TPR repeat 4.0e-34
Putative Complete

Go to Annotations List

Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain