SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene32278

Length: 402 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uma_v2.0_unigene32278
GTGGGGTTTCTGATCTTCGTAATGACTCTCGCCAATTCGGTCGTCTACATCCTGGCCTTCTCTGTCACAGTTGTGGGCATTCTGGGCTATTTCTTGATGATCACCTGCAAGAGGAGGAATTGGATTGCATTCGGAATTGAAAGTGAAGGTGAAAGGGGCGGAATCCAGAGTTCTCCCGCCGAGAATCGAACCGAGGCGGAGGCTCTGCTGCGCCCCTAACGAGCAGCGCTGGAAGGATGGGGTGGTCCCCTAGATTTGTTTGGCATCACGCAGAAACGTTTAGCCCAATCAACACGCCACGTCAACTTTTCCAAAGATTCTGCCACGTACGTCAGACTTCCCATTGATTCCGCCACGTCAGCTTCATTTATTGTATGCGTCTGTATATGGTATCTTTTCTGC

Ace file of the UniGene uma_v2.0_unigene32278 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17790	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9SM55_RICCO	-	-	2.0e-29	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	neutral amino acid transport protein	-	-	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Adenosylhomocysteinase	IPR000043	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Amino acid permease domain	IPR004841	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVV3

Fln msg: your sequence is shorter than subject: 73 - 487

Fln protein: VGFLIFVMTLANSVVYILAFSVTVVGILGYFLMITCKRRNWIAFGIESEGERGGIQSSPAENRTEAEALLRP*

Protein Length: 74

Fln nts: GTGGGGTTTCTGATCTTCGTAATGACTCTCGCCAATTCGGTCGTCTACATCCTGGCCTTCTCTGTCACAGTTGTGGGCATTCTGGGCTATTTCTTGATGATCACCTGCAAGAGGAGGAATTGGATTGCATTCGGAATTGAAAGTGAAGGTGAAAGGGGCGGAATCCAGAGTTCTCCCGCCGAGAATCGAACCGAGGCGGAGGCTCTGCTGCGCCCCTAA___CGAGCAGCGCTGGAAGGATGGGGTGGTCCCCTAGATTTGTTTGGCATCACGCAGAAACGTTTAGCCCAATCAACACGCCACGTCAACTTTTCCAAAGATTCTGCCACGTACGTCAGACTTCCCATTGATTCCGCCACGTCAGCTTCATTTATTGTATGCGTCTGTATATGGTATCTTTTCTGC

Fln Alignment:

uma_mira_c26476___VGFLIFVMTLANSVVYILAFSVTVVGILGYFLMITCKRRNWIAFGIESEGERGGIQSSPAEN
A9NVV3________________VVFLIFVMTLANSVVYILGSSVTVVGVLGYFLMIACKKRNWIAFRIEGEGERGGIQSSPAED

SNPs (tot: 3)

Position	A %	C %	G %	Probability
139		33	66	0.997452
146	66		33	0.997453
199	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain