Sustainpine_db
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Assembly Name: SustainPine v2.0
General Information
Organism: Pinus pinaster
Tissue: several
Description: Complete assembly of Pinus pinaster. Include sequences from Biogeco 1 v2.0, Biogeco 2 v2.0, Biogeco 3 v1.0, UAGPF v2.0,UMA v2.0, INIA v2.0
Assembly Statistics
Number of used reads: 2905300
Number of unigenes: 92478
Mean contig length: 626
SNPs statistics
Tot. SNPs: 713964
Unigenes with SNPs: 45739
Mean SNPs per unigene: 15.6
SSRs statistics
Tot. SSRs: 6862
Mean SSRs per unigene: 1.1
SSRs di-nucl. : 683
SSRs tri-nucl. : 3681
SSRs > tri-nucl. : 2498
Annotations statistics
Annotated unigenes: 70687
Descriptions: 42090
Gos: 4781
Interpros: 5237
ECs: 931
Keggs: 147
Project components

Assembly components:

Unigenes file: sustainpine_v2.0_unigenes.fasta

ACE file: sustainpine_v2.0.ace


Download annotations for specified unigenes:

Paste your unigenes names list (one unigene per line):
Maximum 10 000 names


Or upload unigenes file with names list (one unigene per line):


SFFs:
File 1: Canovas_RL1.sff Not available

File 2: GD4IA4402.sff Not available

File 3: GD4IA4403.sff Not available

File 4: GD4IA4404.sff Not available

File 5: GDTE5QK01.sff Not available

File 6: biogeco1_v2.0 Download(NCBI)

File 7: biogeco2_v2.0 Download(NCBI)

File 8: biogeco3_v1.0 Not available

File 9: inia_v1.0 Not available


SeqTrimNext reports:

File 1: uma_v2.0_report.pdf

File 2: Not Available

File 3: Not Available

File 4: Not Available

File 5: Not Available

File 6: biogeco1_v2.0_report.pdf

File 7: biogeco2_v2.0_report.pdf

File 8: biogeco3_v1.0_report.pdf

File 9: inia_v1.0_report.pdf





Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain