| General Information |
| Organism: |
Pinus pinaster |
| Tissue: |
several |
| Description: |
Complete assembly of Pinus pinaster. Include sequences from Biogeco 1 v2.0, Biogeco 2 v2.0, Biogeco 3 v1.0, UAGPF v2.0,UMA v2.0, INIA v2.0
|
| Assembly Statistics |
|
| Number of used reads: |
2905300 |
| Number of unigenes: |
92478 |
| Mean contig length: |
626 |
| SNPs statistics |
|
| Tot. SNPs: |
713964 |
| Unigenes with SNPs: |
45739 |
| Mean SNPs per unigene: |
15.6 |
| SSRs statistics |
|
| Tot. SSRs: |
6862 |
| Mean SSRs per unigene: |
1.1 |
| SSRs di-nucl. : |
683 |
| SSRs tri-nucl. : |
3681 |
| SSRs > tri-nucl. : |
2498 |
| Annotations statistics |
|
| Annotated unigenes: |
70687 |
| Descriptions: |
42090 |
| Gos: |
4781 |
| Interpros: |
5237 |
| ECs: |
931 |
| Keggs: |
147 |
|
| Project components |
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|
| Assembly components: |
|
| Unigenes file: |
sustainpine_v2.0_unigenes.fasta |
|
| ACE file: |
sustainpine_v2.0.ace |
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| Download annotations for specified unigenes: |
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| SFFs: |
| File 1: |
Canovas_RL1.sff |
Not available
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| File 2: |
GD4IA4402.sff |
Not available
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| File 3: |
GD4IA4403.sff |
Not available
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| File 4: |
GD4IA4404.sff |
Not available
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| File 5: |
GDTE5QK01.sff |
Not available
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| File 6: |
biogeco1_v2.0 |
Download(NCBI)
|
| File 7: |
biogeco2_v2.0 |
Download(NCBI)
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| File 8: |
biogeco3_v1.0 |
Not available
|
| File 9: |
inia_v1.0 |
Not available
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| | |
| SeqTrimNext reports: |
| | |
| File 1: |
uma_v2.0_report.pdf |
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| File 2: |
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Not Available
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| File 3: |
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Not Available
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| File 4: |
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Not Available
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| File 5: |
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Not Available
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| File 6: |
biogeco1_v2.0_report.pdf |
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| File 7: |
biogeco2_v2.0_report.pdf |
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| File 8: |
biogeco3_v1.0_report.pdf |
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| File 9: |
inia_v1.0_report.pdf |
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