General Information
Organism:
Pinus pinaster
Tissue:
several
Description:
Complete assembly of Pinus pinaster. Include sequences from Biogeco 1 v2.0, Biogeco 2 v2.0, Biogeco 3 v1.0, UAGPF v2.0,UMA v2.0, INIA v2.0
Assembly Statistics
Number of used reads:
2905300
Number of unigenes:
92478
Mean contig length:
626
SNPs statistics
Tot. SNPs:
713964
Unigenes with SNPs:
45739
Mean SNPs per unigene:
15.6
SSRs statistics
Tot. SSRs:
6862
Mean SSRs per unigene:
1.1
SSRs di-nucl. :
683
SSRs tri-nucl. :
3681
SSRs > tri-nucl. :
2498
Annotations statistics
Annotated unigenes:
70687
Descriptions:
42090
Gos:
4781
Interpros:
5237
ECs:
931
Keggs:
147
Project components
Assembly components:
Unigenes file:
sustainpine_v2.0_unigenes.fasta
ACE file:
sustainpine_v2.0.ace
Download annotations for specified unigenes:
SFFs:
File 1:
Canovas_RL1.sff
Not available
File 2:
GD4IA4402.sff
Not available
File 3:
GD4IA4403.sff
Not available
File 4:
GD4IA4404.sff
Not available
File 5:
GDTE5QK01.sff
Not available
File 6:
biogeco1_v2.0
Download(NCBI)
File 7:
biogeco2_v2.0
Download(NCBI)
File 8:
biogeco3_v1.0
Not available
File 9:
inia_v1.0
Not available
SeqTrimNext reports:
File 1:
uma_v2.0_report.pdf
File 2:
Not Available
File 3:
Not Available
File 4:
Not Available
File 5:
Not Available
File 6:
biogeco1_v2.0_report.pdf
File 7:
biogeco2_v2.0_report.pdf
File 8:
biogeco3_v1.0_report.pdf
File 9:
inia_v1.0_report.pdf