SustainPineDB

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Assembly info
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Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene30845

Length: 424 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uma_v2.0_unigene30845
TCGAGTCTATCGGAGAGCTTTCTAACCTTCAGGAGCTTGATCTCTCTCACAACTATCTCTCAGGGAGCCTTCCGAAGGAATTATCTAAGCTTCATTTTCTGCAAATCTTCGATATTTCATTCAATAATTTCAAATTTGGTAGTGTGCCCACAGTAATAGCGAATCTCACTGGATTGTTTCAGCTGTCTCTCGCCGGTTGTGGCATCGAGGGTACAATACCCAAGTGGTTGTCGACAATGCCGGCCGGTCTGAATACGCTTGACTTGTCGAGCAACAGCCTCACGGGTACCCTACCGCCATGGCTAGGCAACATGACGGATTTATATTCTCTCAACTTGTCATACAACGCGTTGACATCAACTCTTCCTGAGGAGATGCGCAACCTGCAAAATCTGGGCGTTCTGGACCTCCATTCAAATCACCT

Ace file of the UniGene uma_v2.0_unigene30845 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29088	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[S] COG4886 Leucine-rich repeat (LRR) protein	-	-	2.0e-30	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	26%
Blast2go	serine-threonine protein plant-	-	-	0.0	56%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	LRAT-like domain	IPR007053	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 140 - 946

Fln protein: ESIGELSNLQELDLSHNYLSGSLPKELSKLHFLQIFDISFNNFKFGSVPTVIANLTGLFQLSLAGCGIEGTIPKWLSTMPAGLNTLDLSSNSLTGTLPPWLGNMTDLYSLNLSYNALTSTLPEEMRNLQNLGVLDLHSNH

Protein Length: 141

Fln nts: TCGAGTCTATCGGAGAGCTTTCTAACCTTCAGGAGCTTGATCTCTCTCACAACTATCTCTCAGGGAGCCTTCCGAAGGAATTATCTAAGCTTCATTTTCTGCAAATCTTCGATATTTCATTCAATAATTTCAAATTTGGTAGTGTGCCCACAGTAATAGCGAATCTCACTGGATTGTTTCAGCTGTCTCTCGCCGGTTGTGGCATCGAGGGTACAATACCCAAGTGGTTGTCGACAATGCCGGCCGGTCTGAATACGCTTGACTTGTCGAGCAACAGCCTCACGGGTACCCTACCGCCATGGCTAGGCAACATGACGGATTTATATTCTCTCAACTTGTCATACAACGCGTTGACATCAACTCTTCCTGAGGAGATGCGCAACCTGCAAAATCTGGGCGTTCTGGACCTCCATTCAAATCACCT

Fln Alignment:

uma_mira_c24327___ESIGELSNLQELDLSHNYLSGSLPKELSKLHFLQIFDISFNNFKFGSVPTVIANLTGLFQLSLAGCGIEGTIPKWLSTMPAXXXXXXXXXXXXXXXLPPWLGNMTDLYSLNLSYNALTSTLPEEMRNLQNLGV
C0PTA1________________KGIGNCTFLTFFSAHSNNLCGTVPASLAYCTNLKLIDLSSNNFT-GELPESLSFLNQLSVLSVGYNNLHGGIPKGIT-------------------------NLTMLHVLDLSNNKLSGKIPSDLQKLQGFAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain