SustainPineDB

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Assembly info
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Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene29152

Length: 296 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uma_v2.0_unigene29152
AATTTACCTACTTATTCAAATCCTTTACAAGACAATCCTGCCTATTCTGATGTTGAGCAGTACTTTGTCCATCCAGATGATGTGGTTGCAGAAGATATTGTTGTGCGATTGAATCGACCTAGTGGAATTCATTTTCGTCGTGCAGGGCCACGTGAAAAGGTCTATTTTAAGCCAAATGAAGTGCGTGCTTGTATAGTAACATGTGGAGGTTTATGCCCTGGGCTTAATACTGTCATCCGTGAAATTGTATGTGGTTTATGGCATATGTATGGAGTTCAAGAAGTCCTTGGGATTGA

Ace file of the UniGene uma_v2.0_unigene29152 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25290	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphofructokinase, putative n=1 Tax=Ricinus communis RepID=B9RRX6_RICCO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	6-phosphofructokinase 3-like	-	-	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphofructokinase domain	IPR000023	-	0.0	-
Sma3	Pyrophosphate-dependent phosphofructokinase TP0108	IPR012004	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNG7

Fln msg: Distance to subject end: 400 aas, your sequence is shorter than subject: 98 - 602

Fln protein: NLPTYSNPLQDNPAYSDVEQYFVHPDDVVAEDIVVRLNRPSGIHFRRAGPREKVYFKPNEVRACIVTCGGLCPGLNTVIREIVCGLWHMYGVQEVLGI

Protein Length: 99

Fln nts: AATTTACCTACTTATTCAAATCCTTTACAAGACAATCCTGCCTATTCTGATGTTGAGCAGTACTTTGTCCATCCAGATGATGTGGTTGCAGAAGATATTGTTGTGCGATTGAATCGACCTAGTGGAATTCATTTTCGTCGTGCAGGGCCACGTGAAAAGGTCTATTTTAAGCCAAATGAAGTGCGTGCTTGTATAGTAACATGTGGAGGTTTATGCCCTGGGCTTAATACTGTCATCCGTGAAATTGTATGTGGTTTATGGCATATGTATGGAGTTCAAGAAGTCCTTGGGATTGA

Fln Alignment:

uma_mira_c21971___NLPTYSNPLQDNPAYSDVEQYFVHPDDVVAEDIVVRLNRPSGIHFRRAGPREKVYFKPNEVRACIVTCGGLCPGLNTVIREIVCGLWHMYGVQEVLGI
B8LNG7________________NLPTYPNPLQDNPAYSDVEQYFVHPDDVVAEDIVVRLNRPRGIHFRRAGPREKVYFNPNEVRACIVTCGGLCPGLNTVIREIVCGLWHMYGVQDVLGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain