SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene28724

Length: 199 nt

UniGene Fasta

>uma_v2.0_unigene28724
GGGTTTCGTATGTTGGGCCATGGCTCAGGGATGAGCTGAAACGTTGGTGGAAGAAGCATCACCCCAATGAGACCCTTACATTGAAATATATTGACCCAACTTATATGATCAGAGCTGTGCCTGCTAATGCTGCTGATAATATCTACTGTACTCTGCTTGCTAATTCTGCCATCCATGGAGCCATGGCAGGCTATACTGG

Ace file of the UniGene uma_v2.0_unigene28724

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15551	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	6-phosphofructokinase 2 [Arabidopsis thaliana] sp\|Q9FIK0.1\|K6PF2_ARATH RecName: Full=6-phosphofructokinase 2; AltName: Full=Phosphofructokinase 2; AltName: Full=Phosphohexokinase 2 dbj\|BAB11328.1\| pyrophosphate-fructose-6-phosphate 1-phosphotransferase-li	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	6-phosphofructokinase 2-like	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	64%
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Phosphofructokinase domain	IPR000023	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Pyrophosphate-dependent phosphofructokinase TP0108	IPR012004	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT73

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 65 - 426

Fln protein: VSYVGPWLRDELKRWWKKHHPNETLTLKYIDPTYMIRAVPANAADNIYCTLLANSAIHGAMAGYT

Protein Length: 66

Fln nts: GGGTTTCGTATGTTGGGCCATGGCTCAGGGATGAGCTGAAACGTTGGTGGAAGAAGCATCACCCCAATGAGACCCTTACATTGAAATATATTGACCCAACTTATATGATCAGAGCTGTGCCTGCTAATGCTGCTGATAATATCTACTGTACTCTGCTTGCTAATTCTGCCATCCATGGAGCCATGGCAGGCTATACTGG

Fln Alignment:

uma_mira_c21368___VGPWLRDELKRWWKKHHPNETLTLKYIDPTYMIRAVPANAADNIYCTLLANSAIHGAMAGYT
C0PT73________________VGPWLRDELKNWWKKHHPNEQFTLKYIDPTYMIRAVPGNAADNIYCTLLAHSAIHGVMAGYT

SNPs (tot: 5)

Position	C %	G %	T %	Probability
8		66	33	0.997455
17		66	33	0.997454
18	66		33	0.997452
22		66	33	0.997452
23		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain