SustainPineDB

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Assembly info
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Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene28476

Length: 397 nt

UniGene Fasta

>uma_v2.0_unigene28476
AAGTGTTGGCTATAATAAGTTTCATGGCAGTATTCCTTCCAACATCACAAATCTTGTCAGATTACAAGTGTTGGATTTGTCCAACAATAGAATTAGTGGAAGCATACCATCCAATCTAGAGAGACTCCAGGGATTCAAAAACCCTGGGTTTTCTGATCTTCGTAGTAATACATTGTATGAGGATCTTGAAATTGTCATCAAGGGATTTGAGTATACTATAACATATGTGTTGGCTACAAACACAATATTGGACTTGTCTAACAATAATCTTAGGGGAGAAATACCTCCAAGTATAGGAAATTTGAGTAGCTTGAGGTTGTTGAATTTATCAAATAACCATCTACAAGGGCAAATACCTGCATCTCTTGGTAACATATCTACCTTGGAACAACTGGAC

Ace file of the UniGene uma_v2.0_unigene28476

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene50440	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[S] COG4886 Leucine-rich repeat (LRR) protein	-	-	8.0e-10	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	receptor-like protein kinase	-	-	0.0	58%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 135 aas, your sequence is shorter than subject: 132 - 818

Fln protein: SVGYNKFHGSIPSNITNLVRLQVLDLSNNRISGSIPSNLERLQGFKNPGFSDLRSNTLYEDLEIVIKGFEYTITYVLATNTILDLSNNNLRGEIPPSIGNLSSLRLLNLSNNHLQGQIPASLGNISTLEQLD

Protein Length: 133

Fln nts: AAGTGTTGGCTATAATAAGTTTCATGGCAGTATTCCTTCCAACATCACAAATCTTGTCAGATTACAAGTGTTGGATTTGTCCAACAATAGAATTAGTGGAAGCATACCATCCAATCTAGAGAGACTCCAGGGATTCAAAAACCCTGGGTTTTCTGATCTTCGTAGTAATACATTGTATGAGGATCTTGAAATTGTCATCAAGGGATTTGAGTATACTATAACATATGTGTTGGCTACAAACACAATATTGGACTTGTCTAACAATAATCTTAGGGGAGAAATACCTCCAAGTATAGGAAATTTGAGTAGCTTGAGGTTGTTGAATTTATCAAATAACCATCTACAAGGGCAAATACCTGCATCTCTTGGTAACATATCTACCTTGGAACAACTGGAC

Fln Alignment:

uma_mira_c21017___SVGYNKFHGSIPSNITNLVRLQVLDLSNNRISGSIPSNLERLQGFKNPGFSDLRSNTLYEDLEIVIKGFEYTITYVLATNTILDLSNNNLRGEIPPSIGXXXXXXXXXXXXXXXQGQIPASLGNISTLEQLD
B8LQX6________________SVAYNKLHGDIPASITNLTQLQVLDLSNNRISGRIPRDLERLQGFKILASSKLSSNTLYEDLDIVIKGFEYTLTYVLATNTIFDLSSNNLTGEIPASIGNLSTLRLLNLSRNQLEGKIPASLGQISTLEQLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain