SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene27646

Length: 292 nt

UniGene Fasta

>uma_v2.0_unigene27646
GAAAAAGGTCCCGCGCTTCGGGCTTCTGCCCAAATATGCCTCTGACGAGAGTGAGCTGAAATGGATCGAGGTCCCGGATTGCTTCTGCTTTCATCTCTGGAACGCCTGGGAAGAAGGAGAAGACGAGGTTGTCGTCATCGGCTCCTGTATGACCCCGCCGGACGCCATTTTCAACGAATCTGACAGCGCGCTGCGGAGTGTTCTGTCAGATTCGTTGAATCTCAAAACCGGCTTGTCCACCAGACGCGAGATCACGCCGATGAATCTCGAGGCCGGGCAAGTGAACCGAAAT

Ace file of the UniGene uma_v2.0_unigene27646

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12435	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative 9-cis-epoxycarotenoid dioxygenase n=9 Tax=Cupressaceae RepID=Q0EEH1_TAXDI	-	-	68%
FL-Next	tr=Putative 9-cis-epoxycarotenoid dioxygenase; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	83%
Blast2go	9-cis-epoxycarotenoid dioxygenase	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	9-cis-epoxycarotenoid dioxygenase.	EC:1.13.11.51	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Carotenoid biosynthesis	00906	78%
Blast2go	Biosynthesis of terpenoids and steroids	01062	78%
Blast2go	Biosynthesis of plant hormones	01070	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	78%
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	78%
Blast2go	abscisic acid biosynthetic process	GO:0009688	Biological Process	78%
Blast2go	9-cis-epoxycarotenoid dioxygenase activity	GO:0045549	Molecular Function	78%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	78%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Protamine P1	IPR000221	-	-
Sma3	Carotenoid oxygenase	IPR004294	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q0EF54

Fln msg: Distance to subject end: 124 aas, your sequence is shorter than subject: 97 - 625

Fln protein: KKVPRFGLLPKYASDESELKWIEVPDCFCFHLWNAWEEGEDEVVVIGSCMTPPDAIFNESDSALRSVLSDSLNLKTGLSTRREITPMNLEAGQVNRN

Protein Length: 98

Fln nts: GAAAAAGGTCCCGCGCTTCGGGCTTCTGCCCAAATATGCCTCTGACGAGAGTGAGCTGAAATGGATCGAGGTCCCGGATTGCTTCTGCTTTCATCTCTGGAACGCCTGGGAAGAAGGAGAAGACGAGGTTGTCGTCATCGGCTCCTGTATGACCCCGCCGGACGCCATTTTCAACGAATCTGACAGCGCGCTGCGGAGTGTTCTGTCAGATTCGTTGAATCTCAAAACCGGCTTGTCCACCAGACGCGAGATCACGCCGATGAATCTCGAGGCCGGGCAAGTGAACCGAAAT

Fln Alignment:

uma_mira_c19817___KKVPRFGLLPKYASDESELKWIEVPDCFCFHLWNAWEEGEDEVVVIGSCMTPPDAIFNESDSALRSVLSD-SLNLKTGLSTRREITPMNLEAGQVNRN
Q0EF54________________EKVPRFGILPKYDSDESRMKWIEVPDCFCFHLWNAWEENEDEVVVIGSCMTPPDSIFNESDAALRSVLSEIRLNLKTGKSSRRQLAPMNLEAGQVNRN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain