SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene26643

Length: 501 nt

UniGene Fasta

>uma_v2.0_unigene26643
GCTTTCCACCCGCTAAACCCTGTGATAAGCCCTGGTCATCAACCCTAAGAAGCCTCAACTGGAACAGATAATAGCAATCGCAACAAACACTTTCAGTGACAGCAACAATCTTCACTCTTCGGCTCTCTGCTGCAGTTGGCCATAACAACGAGCAAGATGTCGTTCCAACGCGCTTTCGTCTGTCATTCATCAACAGCCAGCGGAATCAGTAAGCGTCTATTCTCATACCATCCTCGTATAGCTTCCTTGATTCTATCAAAATTCTCAATTTCTCCTCCTCCTCCGTTCACAATCAGATCTTCTGATATCCATAACTTCGTTTCAAATACCAAATCCCTGCAACCCTTGAGACCTTATATCGCTCCATACAAAACGGTATACTCCACAAAACTGCCTTTCGAAAGGGTACCCCAGCACCGAAATCTCATCATCCAAGCCAATTCTGACAACGCCTCGGAGGACGACTCAGACGACGAAGAGGAGAAGAAGAAGCAGGCCGAG

Ace file of the UniGene uma_v2.0_unigene26643

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18755	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SWE4_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	pentatricopeptide repeat-containing protein at4g38150-like	-	-	72%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Ribosomal protein L15e	IPR000439	-	-
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase	IPR001750	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTV5

Fln msg: Distance to subject end: 142 aas, your sequence is shorter than subject: 115 - 257

Fln protein: MSFQRAFVCHSSTASGISKRLFSYHPRIDSLILSKFSISPPPPFTIRSSDIHNFVSNTKSLQSLRPYIAPYKTVYSTKLPFERVPQHRNLIIQANSDNASEDDSDDEEEKKKQAE

Protein Length: 116

Fln nts: GCTTTCCACCCGCTAAACCCTGTGATAAGCCCTGGTCATCAACCCTAAGAAGCCTCAACTGGAACAGATAATAGCAATCGCAACAAACACTTtCAGTGACAGCAACAATCTTCAcTCTTCGGCTCTCTGCTGCAGTTGGCCATAACAACGAGCAAG_-_ATGTCGTTCCAACGCGCTTTCGTCTGTCATTCATCAACAGCcAGCGGAATCAGTAAGCGTCTATTCTCATACCATCCTCGTATAgaTTCCTTGATTCTATCAAAATTCTCAATTTCTCCTCCTCCTCCGTTCACAATCAGATCTTCTGATATcCATAACTTCGTTTCAAATACgAAATCCCTGCAAtcCTTGAGACCTTATATCGCTCCATACAAAACGGTATACTCCACAAAACTGCCTTTCGAAAGGGTACCCCAGCACCGAAATCTCATCATCCAAGCCAATTCTGACAACGCCTCGGAGGACGACTCAGACGACGAAGAGGAGAAGAAGAAGCAGGCCGAG

Fln Alignment:

uma_mira_c18395___MSFQRAFVCHSSTASGISKRLFSYHPRIDSLILSKFSISPPPPFTIRSSDIHNFVSNTKSLQSLRPYIAPYKTVYSTKLPFERVPQHRNLII
A9NTV5________________MLLQHPFVCNLTTASGISKRLFSYHPRLSSLILSKFSISPSPLFTNRSSQIHNLPSNSKPLQSMRPYIAPYRTVYPTKLPFERAPQHRNLII

SSRs (tot: 1)

Start position	End position	Sequence	Length
272	284	CTC CTC CTC CTC C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain