SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene25260

Length: 166 nt

UniGene Fasta

>uma_v2.0_unigene25260
GGTGGAGGCTTGTTGGTAGTAATTGTCCACGAGGCAGAAGATGTTGAAGGCAAACATCATACTAATCCTTATGTAACACTGCTTTTTATGGGAGATGAAAGGAAGACTAAGCGAGTGAAGAAGAATAGGGATCCAAGATGGGAGCAAGATTTTGAATTTATGCTTG

Ace file of the UniGene uma_v2.0_unigene25260

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37230	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Contains similarity to CaLB protein from Arabidopsis thaliana gb\|X96598 and contains multiple C2 PF\|00168 domains	-	-	1.00053e-42	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	plant synaptotagmin	-	-	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	0.0	-
Sma3	C2 membrane targeting protein	IPR018029	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRA0

Fln msg: Distance to subject end: 67 aas, your sequence is shorter than subject: 55 - 536

Fln protein: GGGLLVVIVHEAEDVEGKHHTNPYVTLLFMGDERKTKRVKKNRDPRWEQDFEFML

Protein Length: 56

Fln nts: GGTGGAGGCTTGTTGGTAGTAATTGTCCACGAGGCAGAAGATGTTGAAGGCAAACATCATACTAATCCTTATGTAACACTGCTTTTTATGGGAGATGAAAGGAAGACTAAGCGAGTGAAGAAGAATAGGGATCCAAGATGGGAGCAAGATTTTGAATTTATGCTTG

Fln Alignment:

uma_mira_c16342___GGGLLVVIVHEAEDVEGKHHTNPYVTLLFMGDERKTKRVKKNRDPRWEQDFEFML
B8LRA0________________GGGLLVVRVLEAEDVEGKHHTNPYVRLLFKGEEKKTKPVKKNRDPRWDQEFEFML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain