SustainPineDB

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene23202

Length: 2720 nt

UniGene Fasta

>uma_v2.0_unigene23202
TTTGTGTAGCTTGAAACATCTCCATAGTCAGTGCATTGCATTACTTTTGTGATTTACATATTTCTAATACAGGTCTCCAATGGCATCCCAAGTAGTTCATGGTACTCTTACTGCCACCATATTTGAAGCTAGGCACCTCAGTCATGGAGGCTTACCCAGGTTGCTGAGAAAGGTGGGGGAAGAAGTTAAGGAGCTTCTCCATCAAGATAAGCACAGTGGATTATATGCCACCATAGATATTGGTATTGCTAGAATTGCAAGAACCAGAGTTCTGTCCCGTGAACCTACAAACCCAATTTGGAACGAAACTTTTCACATACTCTGCGCCTACACATCGCCTTCTCTGGTTATCAGCGTTAAGAAGGGATTGGAAATCTCTGCACAAGTGGTTGGAAGAGCCAAGATCCCAATCTCAGAAATTCTCAGCGGCAAGGTCATCGAGGGCTGGTATGACTTATATAATGAAGACTTTTCCGAACAGCTGAAGAAATCTCAGATCCATGCCCGCCTCCAGTTCAAACAAGTCTCAGAAGATCCATATTGGGGTTCCGGGATTCGAGATCGAGACTTCCCAGGAGTCCAGCATGTGTATTTCAAGCAGAGGAAAGGATGCAGAGTCAATCTGTATCAGAATTCTCACTTATCAGAAAACTATCGTCCCAGGATCGAGCTAGGTCATGGTGAGGAGCGCGCCTTATACAGGCCTCCGAGACTGTGGGAGGAAGTGTACCAGTACATTGATGGAGCCGAGCAATTTATATACATTGCTGGATGGTCTGTAAATACCAAGATTACGCTTGTGAGGGACAAGGAAAGGATGATCCCTGGTGCAGAAACTGTGACATTGGGTGAACTTTTGAAGAAGAAAGCGGATCAGGGAGTAAGAGTTCTGGTCCTCATCTGGGAAGATAGAACGGCCGTGGAGCTTCTCAGAAACCAGGGACTCATGCAAACCCACTGTGACGAGACATTTGAATATTTCAAGGGCACCAATGTCTACTGCTTTCAATGTCCCAGACACGCAGACCGTTCGTTGAGTGCATTCCAAACCGTGGAGATTGCAGCAGAGTTTACCCATCACCAGAAGACTGTGTGCTTGGATGCGCGCGTCCATGGCTCTGAGAATCGCGAGGTCGTGAGCTTCGTTGGAGGAATTGATCTCTGCGATGGAAGGTATGATAACGAGATCCATCCATTGTTCAGGACTCTGGATACTGTTTACAGGGATGATTTTCATCAGAACAATTACAAGGGAACGGATCTTCGGCACGGAGGCCCTAGGGAGCCATGGCATGATGCCCATTCTAAGATCCAGGGCCCTGCTGCTTACGATGTGGTCACCAATTTTACTCAGCGCTGGACAAAACAGGCCGATCCCACACTTCTCCTAAATCTTGAGGATTTACCAGGCCTATTGCCGCCTGGAACAAATTTTGAAGGTCCGGAGACCTGGAATGTTCAGATCTTTAGGTCTATAGACGATGCTTCAGTGGTCGGATTCCCTGCAAATCCCTCCGAAGCGCCCGAGCTGGGTTTGATTACTGTAAAGGATCAAGTAATAGACAAAAGCATCCAGTGCGCCTATATCGAAGCCATTCGCCGAGCCAGAGACTTCATTTACATACAGAACCAGTACTTCTTTGGCAGTTGCGCTTCTTGGGACCGAGATCAGGACTGCGAATGTCTGCATCTGATACCAATTGAGATTGCGCTAAAGGTAGTGAGCAAGATCAGAGCCCGGGAGCGGTTCTCCGTGTATGTGCTGACCCCAATGTGGCCGGAGGGAATACCGGAGGGCGATACTGTGCAGGCAATCCTGCACTGGTTCAGGAACACCGCGCGCATGATGTATAAGATGATCGGCGAAGCACTCAGGGAAGAGGGCCTGGACCATGAGTACCGCCCGACTGATTATTTGAATTTCTTCTGCGTGGGGAACAGGGAGGTGAAGCTACCGGGCGAATATGAACCTCCAGAAAGACCAGAAGAAGGGACCGATTACTGGAATGCGCAGATTCACAGGAGAACCATGATCTATGTCCATGCCAAGCTCATGATAGTGGATGATGAATATATTATCATAGGATCAGCGAACCTGAACCAGCGATCCATGGATGGAGCCAGAGACACAGAAATAGCCCAGGGTTGTTACCAGCCAGAGCACATCAACCAGCAGGGTCGCCGAGCTCGGGGGGAGATATTCGGATACCGAATGTCACTGTGGTATGAACATTTTGCGCATAAAAATGGAGGCCTGCGGCGTGAATATCTTCATCCAGAGAGTGTTGAATGCGTGAGGATGGTGCGCCGGATCTCTGAGAAAATTTGGGAGTCATTTGTTCGGGAGGAGACTGTGGAGGATCTGCCGGGCCATCTGATGCCATTCCCTATGCGGGTGTTGGAGGACGGTTCAATGGATGAGGATGAGGATACTGTGTTCCCTGACACAAAAGCTTCTGTGAAAGGCCACAAAATTGATGTGCTTCCTCCCATCCTCACAACCTGATAACTTAGCCATTACTCCTTGGATGCTTATTATGCGTGGCATGCTATTTTCAGATTTGTTCCCTTACAACCTGATAACTTAGCCATTACTACTTGGATGATTATTATGCGTGGCATGCTATTTTCAGACTTGTTCCCTCCCATCCTGTGAGATGTTAATAATAAAATTATAGTCTGTTTCTCTGAAAATGGATTAAATGATAGTGGGTGATCTT

Ace file of the UniGene uma_v2.0_unigene23202

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5700	1/100
SustainPine v2.0	sp_v2.0_unigene15704	65/100
SustainPine v2.0	sp_v2.0_unigene31675	29/100
SustainPine v2.0	sp_v2.0_unigene60506	2/100
SustainPine v2.0	sp_v2.0_unigene60841	3/100

Source	Descriptions	Term	Type	Identity
AutoFact	Phospholipase D n=1 Tax=Sorghum bicolor RepID=C5XCW2_SORBI	-	-	52%
FL-Next	sp=Phospholipase D alpha 1; Zea mays (Maize).	-	-	52%
Blast2go	phospholipase d	-	-	68%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Phospholipase D/Transphosphatidylase	IPR001736	-	-
Sma3	YLP motif	IPR004019	-	-
Sma3	Phospholipase D, plant	IPR011402	-	-
Sma3	Phospholipase D	IPR015679	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q43270

Fln msg:

Fln protein: MASQVVHGTLTATIFEARHLSHGGLPRLLRKVGEEVKELLHQDKHSGLYATIDIGIARIARTRVLSREPTNPIWNETFHILCAYTSPSLVISVKKGLEISAQVVGRAKIPISEILSGKVIEGWYDLYNEDFSEQLKKSQIHARLQFKQVSEDPYWGSGIRDRDFPGVQHVYFKQRKGCRVNLYQNSHLSENYRPRIELGHGEERALYRPPRLWEEVYQYIDGAEQFIYIAGWSVNTKITLVRDKERMIPGAETVTLGELLKKKADQGVRVLVLIWEDRTAVELLRNQGLMQTHCDETFEYFKGTNVYCFQCPRHADRSLSAFQTVEIAAEFTHHQKTVCLDARVHGSENREVVSFVGGIDLCDGRYDNEIHPLFRTLDTVYRDDFHQNNYKGTDLRHGGPREPWHDAHSKIQGPAAYDVVTNFTQRWTKQADPTLLLNLEDLPGLLPPGTNFEGPETWNVQIFRSIDDASVVGFPANPSEAPELGLITVKDQVIDKSIQCAYIEAIRRARDFIYIQNQYFFGSCASWDRDQDCECLHLIPIEIALKVVSKIRARERFSVYVLTPMWPEGIPEGDTVQAILHWFRNTARMMYKMIGEALREEGLDHEYRPTDYLNFFCVGNREVKLPGEYEPPERPEEGTDYWNAQIHRRTMIYVHAKLMIVDDEYIIIGSANLNQRSMDGARDTEIAQGCYQPEHINQQGRRARGEIFGYRMSLWYEHFAHKNGGLRREYLHPESVECVRMVRRISEKIWESFVREETVEDLPGHLMPFPMRVLEDGSMDEDEDTVFPDTKASVKGHKIDVLPPILTT*

Protein Length: 810

Fln nts: TTTGTGTAGCTTGAAACATCTCCATAGTCAGTGCATTGCATTACTTTTGTGATTTACATATTTCTAATACAGGTCTCCA_-_ATGGCATCCCAAGTAGTTCATGGTACTCTTACTGCCACCATATTTGAAGCTAGGCACCTCAGTCATGGAGGCTTACCCAGGTTGCTGAGAAAGGTGGGGGAAGAAGTTAAGGAGCTTCTCCATCAAGATAAGCACAGTGGATTATATGCCACCATAGATATTGGTATTGCTAGAATTGCAAGAACCAGAGTTCTGTCCCGTGAACCTACAAACCCAATTTGGAACGAAACTTTTCACATACTCTGCGCCTACACATCGCCTTCTCTGGTTATCAGCGTTAAGAAGGGATTGGAAATCTCTGCACAAGTGGTTGGAAGAGCCAAGATcCCAATCTCAGAAATTCTCAGCGGCAAGGTCATCGAGGGCTGGTATGACTTATATAATGAAGACTTTTCCGAACAGCTGAAGAAATCTCAGATCCATGCCCGCCTCCAGTTCAAACAAGTCTCAGAAGATCCATATTGGGGTTCCGGGATTCGAGATCGAGACTTCCCAGGAGTCCAGCATGTGTATTTCAAGCAGAGGAAAGGATGCAGAGTCAATCTGTATCAGAATTCTCACTTATCAGAAAACTATCGTCCCAGGATCGAGCTAGGTCATGGTGAGGAGCGCGCCTTATACAGGCCTCCGAGACTGTGGGAGGAAGTGTACCAGTACATTGATGGAGCCGAGCAATTTATATACATTGCTGGATGGTCTGTAAATACCAAGATTACGCTTGTGAGGGACAAGGAAAGGATGATCCCTGGTGCAGAAACTGTGACATTGGGTGAACTTTTGAAGAAGAAAGCGGATCAGGGAGTAAGAGTTCTGGTCCTCATCTGGGAAGATAGAACGGCCGTGGAGCTTCTCAGAAACCAGGGACTCATGCAAACCCACTGTGACGAGACATTTGAATATTTCAAGGGCACCAATGTCTACTGCTTTCAATGTCCCAGACACGCAGACCGTTCGTTGAGTGCATTCCAAACCGTGGAGATTGCAGCAGAGTTTACCCATCACCAGAAGACTGTGTGCTTGGATGCGCGCGTCCATGGCTCTGAGAATCGCGAGGTCGTGAGCTTCGTTGGAGGAATTGATCTCTGCGATGGAAGGTATGATAACGAGATCCATCCATTGTTCAGGACTCTGGATACTGTTTACAGGGATGATTTTCATCAGAACAATTACAAGGGAACGGATCTTCGGCACGGAGGCCCTAGGGAGCCATGGCATGATGCCCATTCTAAGATCCAGGGCCCTGCTGCTTACGATGTGGTCACCAATTTTACTCAGCGCTGGACAAAACAGGCCGATCCCACACTTCTCCTAAATCTTGAGGATTTACCAGGCCTATTGCCGCCTGGAACAAATTTTGAAGGTCCGGAGACCTGGAATGTTCAGATCTTTAGGTCTATAGACGATGCTTCAGTGGTCGGATTCCCTGCAAATCCCTCCGAAGCGCCCGAGCTGGGTTTGATTACTGTAAAGGATCAAGTAATAGACAAAAGCATCCAGTGCGCCTATATCGAAGCCATTCGCCGAGCCAGAGACTTCATTTACATACAGAACCAGTACTTCTTTGGCAGTTGCGCTTCTTGGGACCGAGATCAGGACTGCGAATGTCTGCATCTGATACCAATTGAGATTGCGCTAAAGGTAGTGAGCAAGATCAGAGCCCGGGAGCGGTTCTCCGTGTATGTGCTGACCCCAATGTGGCCGGAGGGAATACCGGAGGGCGATACTGTGCAGGCAATCCTGCACTGGTTCAGGAACACCGCGCGCATGATGTATAAGATGATCGGCGAAGCACTCAGGGAAGAGGGCCTGGACCATGAGTACCGCCCGACTGATTATTTGAATTTCTTCTGCGTGGGGAACAGGGAGGTGAAGCTACCGGGCGAATATGAACCTCCAGAAAGACCAGAAGAAGGGACCGATTACTGGAATGCGCAGATTCACAGGAGAACCATGATCTATGTCCATGCCAAGCTCATGATAGTGGATGATGAATATATTATCATAGGATCAGCGAACCTGAACCAGCGATCCATGGATGGAGCCAGAGACACAGAAATAGCCCAGGGTTGTTACCAGCCAGAGCACATCAACCAGCAGGGTCGCCGAGCTCGGGGGGAGATATTCGGATACCGAATGTCACTGTGGTATGAACATTTTGCGCATAAAAATGGAGGCCTGCGGCGTGAATATCTTCATCCAGAGAGTGTTGAATGCGTGAGGATGGTGCGCCGGATCTCTGAGAAAATTTGGGAGTCATTTGTTCGGGAGGAGACTGTGGAGGATCTGCCGGGCCATCTGATGCCATTCCCTATGCGGGTGTTGGAGGACGGTTCAATGGATGAGGATGAGGATACTGTGTTCCCTGACACAAAAGCTTCTGTGAAAGGCCACAAAATTGATGTGCTTCCTCCCATCCTCACAACCTGA___TAACTTAGCCATTACTCCTTGGATGCTTATTATGCGTGGCATGCTATTTTCAGATTTGTTCCCTTACAACCTGATAACTTAGCCATTACTACTTGGATGATTATTATGCGTGGCATGCTATTTTCAGACTTGTTCCCTCCCATCCTGTGAGATGTTAATAATAAAATTATAGTCTGTTTCTCTgAAaAtGGATTAAATGATAGTGGGTGATCTT

Fln Alignment:

uma_mira_c12106___MASQVVHGTLTATIFEARHLSH-----GGLPRLLRKVGEEVKELLHQDKHSG-LYATIDIGIARIARTRVLSREPTNPIWNETFHILCAYTSPSLVISVKKGLEISAQVVGRAKIPISEILSGKVIEGWYDLYNEDFSEQLKKSQIHARLQFKQVSEDPYWGSGIRDRDFPGVQHVYFKQRKGCRVNLYQNSHLSENYRPRIELGHGEERALYRPPRLWEEVYQYIDGAEQFIYIAGWSVNTKITLVRDKERMIPGAETVTLGELLKKKADQGVRVLVLIWEDRTAVELLRNQGLMQTHCDETFEYFKGTNVYCFQCPRHADRSLSAFQTVEIAAEFTHHQKTVCLDARV--HGSENREVVSFVGGIDLCDGRYDNEIHPLFRTLDTVYRDDFHQNNYKGTDLRHGGPREPWHDAHSKIQGPAAYDVVTNFTQRWTKQAXXXXXXXXXXXXXXXXXXXNF---EGPETWNVQIFRSIDDASVVGFPANPSEAPELGLITVKDQVIDKSIQCAYIEAIRRARDFIYIQNQYFFGSCASWD----RDQDCECLHLIPIEIALKVVSKIRARERFSVYVLTPMWPEGIPEGDTVQAILHWFRNTARMMYKMIGEALREEGLDHEYRPTDYLNFFCVGNREVKLXXXXXXXXXXXXXTDYWNAQIHRRTMIYVHAKLMIVDDEYIIIGSANLNQRSMDGARDTEIAQGCYQPEHINQQGRRARGEIFGYRMSLWYEHFAHKNGGLRREYLHPESVECVRMVRRISEKIWESFVREETVEDLPGHLMPFPMRVLEDGSMDEDEDTV-FPDTKASVKGHKIDVLPPILTT
Q43270________________MAQILLHGTLHATIFEAESLSNPHRATGGAPKFIRKLVEGIEDTVGVGKGATKIYATVDLEKARVGRTRMISNEPVNPRWYESFHIYCAHMAADVIFTVKIDNSIGASLIGRAYLAVQDLLGGEEIDKWLEISDEN-REPVGDSKIHVKLQYFDVGKDRNWARGVRSTKYPGVPYTFFSQRQGCKVTLYQDAHVPDNFVPRIQLADGKN---YEPHRCWEDIFDAISKAQHLIYITGWSVYTEITLVRDTNRPKPGGD-VTLGELLKRKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETANYFHGTDVNCVLCPRNPDDSGSFVQDLQISTMFTHHQKIVVVDHEMPNQGSQQRRIVSFIGGIDLCDGRYDTQYHSLFRTLDTVHHDDFHQPNFEGGSIKKGGPREPWHDIHSRLEGPIAWDVLYNFEQRWRKQGGKDLLVRLRDLPDIIIPPSPVMFPEDRETWNVQLFRSIDGGAAFGFPETPEEAARAGLVSGKDQIIDRSIQDAYVNAIRRAKNFIYIENQYFLGSSYGWKPEGIKPEEIGALHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYTDIAQALEANGI--EANPKDYLTFFCLGNREVKQEGEYEPEEHPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLATR-QPARGQIHGFRMSLWYEHL----GMLEDVFQRPESVECVQKVNEVAEKYWDLYSSDDLEQDLPGHLLSYPIGVTADGSVTELPGMENFPDTRARVLGNKSDYLPPILTT

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1805	12			87	0.992554
1809		12	87		0.992554
1815		85		14	0.993533
1816	14		85		0.993533
1818	14			85	0.993533
1822	12		87		0.992554
1830	87		12		0.992554
1848		12	87		0.992554
2720	11	11		55	0.999999
2721	40		60		1.0
2722	83		16		0.994512
2724	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain