SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene22632

Length: 429 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uma_v2.0_unigene22632
GAAACTTGGTGTCAAGGTGAGGGATCGTTTCGACTGGAACCTACACTGTAGGCGTGGGTGAGGTTGAACTTGGCACTCTACAAGACACTGTGCCTACTGACAGGATTGTCACATTGAAAGGTAGTTGGGGTCTTTTGCGAAAGAGATTTTCTGGTGAGGTTTTGCTTCGGATTACATATAAAGCTTATGTGGAAGATGAAGAGGATGATGGAAAACAGAACATACCACTAGAAGATGATGTATCTGATGACGAGACATTGAGGTCTGAAGAGAAGAATCACAGCACAACATCCAAAAACAACGGCATATCAAATGGTGCTGAGGAGGAGTCGTTTATGGACAAGCTTGTGGCGTTGCTGGTCAGCGAAGAATTTCAAGGGATAGTTGCATCTGAAGCGGAGGACATGAAAAATTCTGAAGACACCAATG

Ace file of the UniGene uma_v2.0_unigene22632 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30421	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Integral membrane single C2 domain protein n=2 Tax=Populus trichocarpa RepID=B9HY18_POPTR	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	60%
Blast2go	integral membrane single c2 domain protein	-	-	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	0.0	-
Sma3	C2 membrane targeting protein	IPR018029	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7TAD6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 58 aas, your sequence is shorter than subject: 142 - 667

Fln protein: NLVSR*GIVSTGTYTVGVGEVELGTLQDTVPTDRIVTLKGSWGLLRKRFSGEVLLRITYKAYVEDEEDDGKQNIPLEDDVSDDETLRSEEKNHSTTSKNNGISNGAEEESFMDKLVALLVSEEFQGIVASEAEDMKNSEDTN

Protein Length: 143

Fln nts: GAAACTTGGTGTCAAGGTGAGGGATCGTTTCGACTGGAACCTACACTGTAGGCGTGGGTGAGGTTGAACTTGGCACTCTACAAGACACTGTGCCTACTGACAGGATTGTCACATTGAAAGGTAGTTGGGGTCTTTTGCGAAAGAGATTTTCTGGTGAGGTTTTGCTTCGGATTACATATAAAGCTTATGTGGAAGATGAAGAGGATGATGGAAAACAGAACATACCACTAGAAGATGATGTATCTGATGACGAGACATTGAGGTCTGAAGAGAAGAATCACAGCACAACATCCAAAAACAACGGCATATCAAATGGTGCTGAGGAGGAGTCGTTTATGGACAAGCTTGTGGCGTTGCTGGTCAGCGAAGAATTTCAAGGGATAGTTGCATCTGAAGCGGAGGACATGAAAAATTCTGAAGACACCAATG

Fln Alignment:

uma_mira_c10771___TVGVGEVELGTLQDTVPTDRIVTLKGSWGLLRKRFSGEVLLRITYKAYVEDEEDDGKQNIPLEDDVSDDETLRSEEKNHSTTSKNNGISNGAEEESFMDKLVALLVSEEFQGIVASEAEDMKNSED
D7TAD6________________TIGTGEVDLGSLKDTVPTDRIVVLQGGWGLFRRGSSGEILLRLTYKAYVEDEEDDKTEAESMDTDVSDDEMSDSEEVDATFEQSQRGTLNGTDKESFMDLLAALIVSEEFQGIVASETGSMQPSDD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain