SustainPineDB

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene15302

Length: 1219 nt

UniGene Fasta

Ace file of the UniGene uma_v2.0_unigene15302

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18498	299/307
SustainPine v2.0	sp_v2.0_unigene62391	8/307

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L15-1 n=8 Tax=Embryophyta RepID=RL15A_PICMA	-	-	85%
FL-Next	sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L15e	IPR000439	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ28

Fln msg:

Fln protein: MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITRPTRPDKARRLGYKAKQGYVVYRIRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVILVDQAHKVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR*

Protein Length: 206

Fln nts: ATTTTCCCTTCCTCTCTATTGTTTTGAGAAGTGGGAGCATCGGCGGAGAGGGCGCAGACAGAGACTCAGAGGTAGCAGGGGATTTGAGCAATCCATCC_-_ATGGGTGCGTATAAGTACATAGAGGAGTTATGGAAGAAGAAGCAATCGGATGTGATGAGATTTCTGCAGAGGGTCAGGTGTTGGGAGTACAGGCAGCTCCCCGGCATTGTGAGGATTACTCGCCCAACTCGTCCCGATAAGGCACGCCGTCTTGGATATAAGGCCAAACAGGGTTATGTTGTTTACCGCATACGAGTAAGGCGTGGTGGGCGGAAGAGGCCAGTGCCCAAAGGTATTGTTTACGGGAAGCCCAAGAATCAGGGTATTACCCAACTCAAGTTCCAGCGTAGCTTGAGATCCGTGGCAGAAGAGAGAGCCGGACGAAAGCTGGGAGGATTGAGAGTTTTGAACTCTTACTGGATCAACCAGGACTCCACCTACAAGTATTATGAAGTGATCCTGGTTGACCAGGCACACAAGGTAATACGAAATGATCCTCGAATCAACTGGATCTGTAATGCAGTTCACAAGCACAGAGAGCTTCGTGGACTTACATCAGCTGGAAAGAAGTACAGGGGTCTCCGAGGACGGGGCCATCTGTACCACAAGGCTCGTCCTTCCAAACGTGCTACATGGAAAAGAAACAATACTCTATCTCTCCGGCGTTATCGATAG___ATTCTTGGGTAGCATCTATAATAGCTTTGCATTCAAAACTTATATTGTTTCATTTGTCGGCAGCATACTGTTTTGTTATTCTAGAGAAACAACTGGTGGTTTAGTTTATTTCTAAATGGACGTAATTTTTGAGTCTGCGCTCTTACTGTTTCTGCAATTGAAACATGCGAGAAATTGAAATTGTTGATCTTTTAGAGTTTCTGATTGGATCTAGTCTTCTTGAAAGAGTTGATTCTATCAAATTGAGTCAGGGCAGGTATTTGTGTCTTCAATTTTTCGGCTGATATCTATATTCTGTTGTCCCATATAATTGAGAGGGATTGAAGTGGAACATATATGTGCTTATTACCTTTGTTTAACTGCAATAAATAGAGGTCCACTTAATGCCAAGTTATTAAAGTTGCTTGAAATGTATTTTTTCATGTTATGGCATTCGTGGCAGATTAGGCTTCAGTATTTATTCAATTGTTAAAATAATAGACAATATTCGGACGATAGATTTCTGG

Fln Alignment:

Contig15302___MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXXVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVILVDQAHKVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR
A9NZ28________________MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
987	11			86	1.0
1107		22		77	0.999999
1111	71		28		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain