SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene13438

Length: 576 nt

UniGene Fasta

>uma_v2.0_unigene13438
GGTGTGGATAGCACAGAGGTATGTTCAGGGGATTCTGTTTAAAGATGCCCATTTGAAATAGCTCAAGTGTGGTTGTGAGAGAATTCTGTTGAGATTAGTGATCTGGAGATGCCCGTTTGAGAACGACTGTGGTATGCGCAGAAAATATATATATATAATATATATCGCGTTCGTTGATCTGAAGGAGAGCCAAGGAACAAAGAATTGGAGGGAAAATTGCGAGTCATGTTGGAGTCGGAGAGTTGCATTATGTCCGGTTTACCCGAACAAGAGCTGGTGAGGAAGAAGCATTACCAGCCGGCAGCATGTATCGAGGACTTAGACCACAATGAGAAAATGGAGAAAAGAATGATGTTCCAGGAGCCTCCGGGATTCGATCATAAGAAGATCAGGACTTCTGTGGACGTGAGGAAGGGTATTCTGAAGAGGGTCAGGTGCCAAGGTGAGCAATACGATGCTGAAAACCAAGGTGAGGAACCCATGATTCAATGATTCCTGGTCTTCATGATGACTTAGGTTTGGATTGCCTTGCATTGACTTCTAGATCAGATTATGGATCATTGGCTTGTTTAAACA

Ace file of the UniGene uma_v2.0_unigene13438

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10814	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box/kelch-repeat protein [Arabidopsis thaliana] sp\|Q9FKJ0.1\|FK132_ARATH RecName: Full=F-box/kelch-repeat protein At5g60570 dbj\|BAB08240.1\| unnamed protein product [Arabidopsis thaliana] gb\|ABM06035.1\| At5g60570 [Arabidopsis thaliana] gb\|AED97346.1\| F-bo	-	-	0.0001	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	f-box kelch-repeat protein at5g60570-like isoform 1	-	-	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3		IPR013089	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQD3

Fln msg: Overlapping hits, possible frame ERROR between 474 and 474, Distance to subject end: 315 aas, your sequence is shorter than subject: 117 - 432

Fln protein: MLESESCIMSGLPEQELVRKKHYQPAACIEDLDHNEKMEKRMMFQEPPGFDHKKIRTSVDVRKGILKRVRCQGEQYDAENQGxxTHDSMIPGLHDDLGLDCLALTSRSDYGSLACLN

Protein Length: 118

Fln nts: GGTGTGGATAGCACAGAGGTATGTTCAGGGGATTCTGTTTAAAGATGCCCATTTGAAATAGCTCAAGTGTGGTTGTGAGAGAATTCTGTTGAGATTAGTGATCTGGAGATGCCCGTTTGAGAACGACTGTGGTATGCGCAGAAAATATATATATATAATATATATCGCGTTCGTTGATCTGAAGGAGAGCCAAGGAACAAAGAATTGGAGGGAAAATTGCGAGTC_-_ATGTTGGAGTCGGAGAGTTGCATTATGTCCGGTTTACCCGAACAAGAGCTGGTGAGGAAGAAGCATTACCAGCCGGCAGCATGTATCGAGGACTTAGACCACAATGAGAAAATGGAGAAAAGAATGATGTTCCAGGAGCCTCCGGGATTCGATCATAAGAAGATCAGGACTTCTGTGGACGTGAGGAAGGGTATTCTGAAGAGGGTCAGGTGCCAAGGTGAGCAATACGATGCTGAAAACCAAGGTxxxxxxACCCATGATTCAATGATTCCTGGTCTTCATGATGACTTAGGTTTGGATTGCCTTGCATTGACTTCTAGATCAGATTATGGATCATTGGCTTGTTTAAACA

Fln Alignment:

Contig13438___MLESESCIMSGLPEQELVRKKHYQPAACIEDLDHNEKMEKRMMFQEPPGFDHKKIRTSVDVRKGILKRVRCQGEQYDAENQGEGTHDSMIPGLHDDLGLDCLALTSRSDYGSLACLN
B8LQD3________________MLESQSCLMSSSPEQELVKKKHYLPAACMVDLHHNEKIEKKMMFQEPPGFDHKKIRTSVDVRKGILKRVRCQGEQYDAENQGEGTHDSMIPGLHDDLGLDCLALTSRSDYGSLACLN

SSRs (tot: 1)

Start position	End position	Sequence	Length
145	157	AT AT AT AT AT AT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain