SustainPineDB

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene12587

Length: 3082 nt

UniGene Fasta

>uma_v2.0_unigene12587
GAGTTGAGGTGATGTGAAGTGGGTTAAGCTGGGTTGAACTAGAAACCAGAGAAACCAGTATTCTGGGAGGGTTTGATTGAATTCTGCAGTTCATTTTTGTAGAAACTTAGCTGTGGTTGTGAAATGGGTCTTTGTGGATTGAGTGGATGTGAAGTGGGTTTTGGTTAGTTTAGCATATGTGAAGTGGGTTTTGCAGGGTTGGGCTAGAAACCATTGAAGGCCATAGAGAACCAGTGTTTTAGTGAGGGTTTGATTGAAAACAACCATGGGTTTTTGTAGAAACATATTTGGATTTGTTGCTGTGTTTGTCTTACTGTGGGAAGTGGAATGTGCGAGAACCTATATAGTCAGAGTAGATATAGATTCAAAGCCATCAGTATTTCCCTCCCATGAGCACTGGTATATGGCCAAGGTGGCTGCAGTGAAGGGCCTGATTACCGATGAAAAAAACCTTGCTGCTGTTAAAGGTGATATCTTGATTCATGTCTATAAGACAGTGTTCCATGGATTCTCAGCCAAGCTCACTCCGGAGCAAGCTGAGAAGCTTGATAGGTCACATGGAGTGTTGGCAGTGCTTCCTGATAGGGTCAGGCAGTTGCATACAACGAGGTCGCCCCAGTTTTTAGGTCTGAGGCCTAGTGGAGGATTATGGCCCGAGTCAGACTATGGTTCTGATTTGGTGGTGGGGCTTTTGGACACTGGAATATGGCCTGAGAGAAAGAGCTTCAGTGAACATGGGCTAGGACCGGTTCCTAGGAACTGGAAGGGTGAATGCGAGGAGGGGAGTGGGTTTTCTAAGAATTTATGTAATAAGAAATTGGTGGGTGCAAGGTTTTTCCCAAAAGGGTATGAAGCCATGGTTGGGGCTATGAACACTTCTCGGGAATCCAGGTCTCCCAGAGACACAGATGGCCATGGGTCACACACTGCATCGATTGCTACTGGGAGGCATGTTTACAAAGCCAATATGCTTGGTTATGCCAGTGGGATTGCGAAAGGGATGGCACCGAAAGCTCGGTTGGCGACATACAAGGTATGCTGGCAGTCTGGTTGTTTTGATTCAGATATACTTTCTGCATTCGATCGTGCGATAGAGGATGGTGTTGATGTGATTTCGCTATCTGTGGGTGGTGGGATTGTGCCTTATTATCTTGATAGCATTGCAATGGGTGCGTTTGGGGCAATGGAGAAGGGTGTGTTTGTGGCCACCTCAGCAGGGAATGATGGACCCGGGGGCTTGTCAGTTAGCAATCTCTCACCATGGGTAACTACTGTGGGTGCAGGGACATTGGATAGAGATTTCCCTGCAGAGGTTAAGTTGGGTAATGGAAAAATCATCAGGGGAGTGTCTTTGTACAGTGGAAAGCCCTTGGGTTCAGGTTTGTTCCCCTTGGTCTATGCTGGGGACACTTCTATGGGGGGTAGCAGGGATAGCTATTCGTCTTCTTTATGTATGGAAGGATCCCTGGATCCCAAGCTGGTGAAAGGGAAAATAGTGATGTGTGACAGAGGGAACAACCCCAGAATTTCAAAGGGGGCCGAGGTGAAGCATGCTGGAGGAGTCGGAATGATCCTGGCAAACAGCGATTCAGATGGTGAAGGTCTTGTTGCAGATGCTCATATGCTGCCTACAAGTGCAGTTGGGGCCAAAGAAGGAGAGCTTATCAGGCAATACATTGCTACCACCAAAGGGCCCTCTGCTACAATTTCAGGCCTGGGGACTGTTCTGGGTATAAAGCCTGCCCCTGTTGTAGCATCCTTTTCTTCTAGAGGACCCAATCCAGAGACTCCAGAGATTCTCAAGCCTGATGTTATTGCTCCAGGTGTGAATATCCTCGCAGGATGGACCGGTGCAGTAGGTCCGTCAAGCCTTCCAACTGACAAGAGGAGGACACAATTCAATATCTTGTCTGGTACTTCAATGGCTTGTCCTCACGTGAGTGGAGTTGCTGCCCTTCTCAAAGGAGCACACCCACGGTGGAGCCCTGCAGCAATAAGATCGGCTCTTATGACCACTGCTTATACTCAAGATAATAGAGGTCACAGGATGATTGATGAAGCCTCTGGCAATGCATCCACTCCTTTTGATTTCGGTGCAGGGCATGTACATCCTGAAAGGGCTATGGATCCTGGTCTTATCTACGATGCGGGTACTGAGGACTATGTTAGATTCCTATGCAGCCTTAATTATACCACAAAATCCATTCAGGTTATCACCCGAAAGCCTGCCCAGTGCCCCGCACGAAGAATAAGTCCTGGTAATCTCAACTATCCTTCGTTCTCTGCAGTTTTTGACCTCAGTCAACCCACGAAGCTCTCAACTGTCTTCTTTAGAACTGTCACTAATGTAGGCCCTCCTCGGTCCGTCTATAAAGTCAGGGTCATTCCTCCAAGGGGAGGTGTGACTGTGACTGTCAAGCCAAGAAAGCTGGTCTTTACCGAGGCAAACCAGAAACTGAGCTACACTGTCACCGTAACCACAAAGCCTATGAACCTTCTCCCTGGTAACGCGGACACGCGCTTTGGCTTCCTTTCCTGGACAGATGGGAAGCATGTTGTGCAGAGCCCACTTGTTGTAACTAGACAGGAGCCTTATTAATTCTGCTTTTCTCCAAATCCTGTACTCATTGAAGATTTAATGGTCACCGACTGAAATGGAGTTTTTCTGCCCCTTCTGTTGATATACCTGCAGAAGGTGGAAGCAGATCATTGTACAGGTGTGTAGTAAACAAGTATTCACATGTAGTTTCTCAGTTAATTTGGTTTTGCGATCAACAGGGTAGTGCTTTGCGTTTATTTTGGGAGTCACTTCAATGCAATGACGGAGAGGATTCAACATTGGATTACAGTGGTTCCTGAGTGTGTGTAATGGAGAGTTTTAGCATAGGATGATATATATATGATATATTTCCATGGATTCTCTATGTTAGGTGCAGAGCTGTGTATACCTATCAAGGTATAGGCTTGAATAATCATCATCGTAATGATAAATTATGTAATAAGCAGACTTAGCAGAATATTACTTTTATTGATTCTTCTGTATGAATCAGGTGTTGAGAATTGAGAATATTACTTTTTTGAC

Ace file of the UniGene uma_v2.0_unigene12587

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16568	251/253
SustainPine v2.0	sp_v2.0_unigene74717	1/253

Source	Descriptions	Term	Type	Identity
AutoFact	putative subtilisin serine protease [Arabidopsis thaliana]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	subtilisin-like protease-like	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Phosphofructokinase domain	IPR000023	-	-
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3		IPR000991	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	GMP synthase, C-terminal	IPR001674	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	GMP synthase, N-terminal	IPR004739	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR011702	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Peroxisome membrane protein, Pex16	IPR013919	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-
Sma3		IPR018318	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPS1

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 778 - 690

Fln protein: MGFCRNIFGFVAVFVLLWEVECARTYIVRVDIDSKPSVFPSHEHWYMAKVAAVKGLITDEKNLAAVKGDILIHVYKTVFHGFSAKLTPEQAEKLDRSHGVLAVLPDRVRQLHTTRSPQFLGLRPSGGLWPESDYGSDLVVGLLDTGIWPERKSFSEHGLGPVPRNWKGECEEGSGFSKNLCNKKLVGARFFPKGYEAMVGAMNTSRESRSPRDTDGHGSHTASIATGRHVYKANMLGYASGIAKGMAPKARLATYKVCWQSGCFDSDILSAFDRAIEDGVDVISLSVGGGIVPYYLDSIAMGAFGAMEKGVFVATSAGNDGPGGLSVSNLSPWVTTVGAGTLDRDFPAEVKLGNGKIIRGVSLYSGKPLGSGLFPLVYAGDTSMGGSRDSYSSSLCMEGSLDPKLVKGKIVMCDRGNNPRISKGAEVKHAGGVGMILANSDSDGEGLVADAHMLPTSAVGAKEGELIRQYIATTKGPSATISGLGTVLGIKPAPVVASFSSRGPNPETPEILKPDVIAPGVNILAGWTGAVGPSSLPTDKRRTQFNILSGTSMACPHVSGVAALLKGAHPRWSPAAIRSALMTTAYTQDNRGHRMIDEASGNASTPFDFGAGHVHPERAMDPGLIYDAGTEDYVRFLCSLNYTTKSIQVITRKPAQCPARRISPGNLNYPSFSAVFDLSQPTKLSTVFFRTVTNVGPPRSVYKVRVIPPRGGVTVTVKPRKLVFTEANQKLSYTVTVTTKPMNLLPGNADTRFGFLSWTDGKHVVQSPLVVTRQEPY*

Protein Length: 779

Fln nts: GAGTTGAGGTGATGTGAAGTGGGTTAAGCTGGGTTGAACTAGAAACCAGAGAAACCAGTATTCTGGGAGGGTTTGATTGAATTCTGCAGTTCATTTTTGTAGAAACTTAGCTGTGGTTGTGAAATGGGTCTTTGTGGATTGAGTGGATGTGAAGTGGGTTTTGGTTAGTTTAGCATATGTGAAGTGGGTTTTGCAGGGTTGGGCTAGAAACCATTGAAGGCCATAGAGAACCAGTGTTTTAGTGAGGGTTTGATTGAAAACAACC_-_ATGGGTTTTTGTAGAAACATATTTGGATTTGTTGCTGTGTTTGTCTTACTGTGGGAAGTGGAATGTGCGAGAACCTATATAGTCAGAGTAGATATAGATTCAAAGCCATCAGTATTTCCCTCCCATGAGCACTGGTATATGGCCAAGGTGGCTGCAGTGAAGGGCCTGATTACCGATGAAAAAAACCTTGCTGCTGTTAAAGGTGATATCTTGATTCATGTCTATAAGACAGTGTTCCATGGATTCTCAGCCAAGCTCACTCCGGAGCAAGCTGAGAAGCTTGATAGGTCACATGGAGTGTTGGCAGTGCTTCCTGATAGGGTCAGGCAGTTGCATACAACGAGGTCGCCCCAGTTTTTAGGTCTGAGGCCTAGTGGAGGATTATGGCCCGAGTCAGACTATGGTTCTGATTTGGTGGTGGGGCTTTTGGACACTGGAATATGGCCTGAGAGAAAGAGCTTCAGTGAACATGGGCTAGGACCGGTTCCTAGGAACTGGAAGGGTGAATGCGAGGAGGGGAGTGGGTTTTCTAAGAATTTATGTAATAAGAAATTGGTGGGTGCAAGGTTTTTCCCAAAAGGGTATGAAGCCATGGTTGGGGCTATGAACACTTCTCGGGAATCCAGGTCTCCCAGAGACACAGATGGCCATGGGTCACACACTGCATCGATTGCTACTGGGAGGCATGTTTACAAAGCCAATATGCTTGGTTATGCCAGTGGGATTGCGAAAGGGATGGCACCGAAAGCTCGGTTGGCGACATACAAGGTATGCTGGCAGTCTGGTTGTTTTGATTCAGATATACTTTCTGCATTCGATCGTGCGATAGAGGATGGTGTTGATGTGATTTCGCTATCTGTGGGTGGTGGGATTGTGCCTTATTATCTTGATAGCATTGCAATGGGTGCGTTTGGGGCAATGGAGAAGGGTGTGTTTGTGGCCACCTCAGCAGGGAATGATGGACCCGGGGGCTTGTCAGTTAGCAATCTCTCACCATGGGTAACTACTGTGGGTGCAGGGACATTGGATAGAGATTTCCCTGCAGAGGTTAAGTTGGGTAATGGAAAAATCATCAGGGGAGTGTCTTTGTACAGTGGAAAGCCCTTGGGTTCAGGTTTGTTCCCCTTGGTCTATGCTGGGGACACTTCTATGGGGGGTAGCAGGGATAGCTATTCGTCTTCTTTATGTATGGAAGGATCCCTGGATCCCAAGCTGGTGAAAGGGAAAATAGTGATGTGTGACAGAGGGAACAACCCCAGAATTTCAAAGGGGGCCGAGGTGAAGCATGCTGGAGGAGTCGGAATGATCCTGGCAAACAGCGATTCAGATGGTGAAGGTCTTGTTGCAGATGCTCATATGCTGCCTACAAGTGCAGTTGGGGCCAAAGAAGGAGAGCTTATCAGGCAATACATTGCTACCACCAAAGGGCCCTCTGCTACAATTTCAGGCCTGGGGACTGTTCTGGGTATAAAGCCTGCCCCTGTTGTAGCATCCTTTTCTTCTAGAGGACCCAATCCAGAGACTCCAGAGATTCTCAAGCCTGATGTTATTGCTCCAGGTGTGAATATCCTCGCAGGATGGACCGGTGCAGTAGGTCCGTCAAGCCTTCCAACTGACAAGAGGAGGACACAATTCAATATCTTGTCTGGTACTTCAATGGCTTGTCCTCACGTGAGTGGAGTTGCTGCCCTTCTCAAAGGAGCACACCCACGGTGGAGCCCTGCAGCAATAAGATCGGCTCTTATGACCACTGCTTATACTCAAGATAATAGAGGTCACAGGATGATTGATGAAGCCTCTGGCAATGCATCCACTCCTTTTGATTTCGGTGCAGGGCATGTACATCCTGAAAGGGCTATGGATCCTGGTCTTATCTACGATGCGGGTACTGAGGACTATGTTAGATTCCTATGCAGCCTTAATTATACCACAAAATCCATTCAGGTTATCACCCGAAAGCCTGCCCAGTGCCCCGCACGAAGAATAAGTCCTGGTAATCTCAACTATCCTTCGTTCTCTGCAGTTTTTGACCTCAGTCAACCCACGAAGCTCTCAACTGTCTTCTTTAGAACTGTCACTAATGTAGGCCCTCCTCGGTCCGTCTATAAAGTCAGGGTCATTCCTCCAAGGGGAGGTGTGACTGTGACTGTCAAGCCAAGAAAGCTGGTCTTTACCGAGGCAAACCAGAAACTGAGCTACACTGTCACCGTAACCACAAAGCCTATGAACCTTCTCCCTGGTAACGCGGACACGCGCTTTGGCTTCCTTTCCTGGACAGATGGGAAGCATGTTGTGCAGAGCCCACTTGTTGTAACTAGACAGGAGCCTTATTAATTCTGCTTTTCTCCAAATCCTGTACTCATTGAAGATTTAATGGTCACCGACTGAAATGGAGTTTTTCTGCCCCTTCTGTTGATATACCTGCAGAAGGTGGAAGCAGATCATTGTACAGGTGTGTAGTAAACAAGTATTCACATGTAGTTTCTCAGTTAATTTGGTTTTGCGATCAACAGGGTAGTGCTTTGCGTTTATTTTGGGAGTCACTTCAATGCAATGACGGAGAGGATTCAACATTGGATTACAGTGGTTCCTGAGTGTGTGTAATGGAGAGTTTTAGCATAGGATGATATATATATGATATATTTCCATGGATTCTCTATGTTAGGTGCAGAGCTGTGTATACCTATCAAGGTATAGGCTTGAATAATCATCATCGTAATGATAAATTATGTAATAAGCAGACTTAGCAGAATATTACTTTTATTGATTCTTCTGTATGAATCAGGTGTTGAGAATTGAGAATATTACTTTTTTGAC

Fln Alignment:

Contig12587___RTYIVRVDIDSKPSVFPSHEHWYMAKVAAVKGLITDEKNLAAVKGDILIHVYKTVFHGFSAKLTPEQAEKLDRSHGVLAVLPDRVRQLHTTRSPQFLGLRPS-GGLWPE-SDYGSDLVVGLLDTGIWPERKSFSEHGLGPVPRNWKGECEEGSGFSKNLCNKKLVGARFFPKGYEAMVGAMNTSRESRSPRDTDGHGSHTASIATGRHVYKANMLGYASGIAKGMAPKARLATYKVCWQSGCFDSDILSAFDRAIEDGVDVISLSVGGGIVPYYLDSIAMGAFGAMEKGVFVATSAGNDGPGGLSVSNLSPWVTTVGAGTLDRDFPAEVKLGNGKIIRGVSLYSGK---PLGSGLFPLVYAGDTXXXXXXXXXXXXLCMEGSLDPKLVKGKIVMCDRGNNPRISKGAEVKHAGGVGMILANSDSDGEGLVADAHMLPTSAVGAKEGELIRQYIATTKGPSATISGLGTVLGIKPAPVVASFSSRGPNPETPEILKPDVIAPGVNILAGWTGAVGPSSLPTDKRRTQFNILSGTSMACPHVSGVAALLKGAHPRWSPAAIRSALMTTAYTQDNRGHRMIDEASGNASTPFDFGAGHVHPERAMDPGLIYDAGTEDYVRFLCSLNY
C0PPS1________________KTYVVHMAKSQMPAGFTSHEHWY---ASAVKSVLSEEEEPS------ILYNYDDAFHGFAARLNAAQAEALEKTHGILGIYPETVYELHTTRTPQFLGLETAESGMWPEKANFGHDVVIGVLDTGVWPESLSFNDRGMGPVPAHWKGACESGTNFTASHCNKKLIGARFLSRGYEAAVGPINETAEFRSPRDQDGHGTHTASTAAGAVVLKADLVGYAKGTARGMATRARIAAYKVCWVGGCFSTDILAALDKAVADGVNVLSLSLGGGLEPYYRDSISLGTFGAMEKGIFVSCSAGNGGPDPISLSNVAPWIATIGAGTLDRDFPAYVELGNGLNFTGVSLYHGRRGLPSGEQV-PLVYFGSNTSAGSRSATN--LCFAGSLDRKLVAGKMVVCDRGISARVAKGAVVKSAGGVGMILANTDANGEELVADCHLLPASAVGEANGDAIKHYITSTKNPTATIHFGGTVLGVKPSPVVAAFSSRGPNLVNPEILKPDMIAPGLNILAAWTGITGPTGLSDDLRRVKFNILSGTSMSCPHVTGIAALMKGAHPEWSPAAIKSALMTTAYTVDNMGHKIEDSATANASTPFDHGAGHVDPKSALNPGLIYDISADDYIEFLCSLNY

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
196		25	75		0.996473
337	83		16		0.994512
361	83	16			0.994512
455	12		87		0.992554
613		50	50		1.0
1066			12	87	0.992554
1085	14	85			0.993533
1090			85	14	0.993533
1151		87		12	0.992554
1454	87			12	0.992554
1669	16		83		0.994512
2164		80		20	0.995493
2709	90			10	0.90298
2900	96			3	0.977075
2901		3		96	0.977075
2902		3	96		0.977075
2905	96		3		0.978007
2906			3	96	0.978007
2912		95		4	0.981742
2916			95	4	0.981742
2918			4	95	0.981742
2919			4	95	0.981742
2920		95		4	0.981742
2921			4	95	0.981742
2923	4			95	0.982677
2924	95		4		0.982677
2925	4			95	0.982677
2927		4		95	0.982677
2934		95		4	0.98361
2936			95	5	0.984544
2938		5	95		0.984544
2941	5		95		0.984544
2943		5	95		0.984544
2944	5			95	0.984544
2946			5	95	0.984544
2947	95		5		0.984544
2948		95		5	0.984544
2949	5	95			0.984544

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain