SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene12126

Length: 342 nt

UniGene Fasta

>uma_v2.0_unigene12126
AAATCCCCATTTTTTTTTGTTAGACTTGGGTTGATTGAACCCTAATACCGAAATGGGTCAAACTGAACACCCATCCATCCAAACGAACAATCACGACTCTAATGGAGTGGCCGTCCAGATCCATCCATCACGTATACTTCCTGATTTTCTCCAGAGTGTCAATCTGAAATATGTCAAACTCGGCTATCATTATCTTATAACCCATCTCCTGACTCTGCTCTTGATCCCTCTCATGGTGGGTATGCTTCTTGAAGTGGGACGGATGAACCCGGAAGATATCTGGCAGCTCTGGATCCATTTACAGTTCAATCTCGTCAGTGTTCTTGTCTGTTTGGCCATTCT

Ace file of the UniGene uma_v2.0_unigene12126

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8718	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase n=4 Tax=rosids RepID=A9PEC4_POPTR	-	-	76%
FL-Next	sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	3-ketoacyl- synthase	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	92%
Blast2go	very long-chain fatty acid metabolic process	GO:0000038	Biological Process	92%
Blast2go	cuticle development	GO:0042335	Biological Process	92%
Blast2go		GO:0008415	Molecular Function	92%
Blast2go	membrane	GO:0016020	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Very-long-chain 3-ketoacyl-CoA synthase	IPR012392	-	-
Sma3	FAE1/Type III polyketide synthase-like protein	IPR013601	-	-
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVH1

Fln msg: Distance to subject end: 424 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 96 - 530

Fln protein: MGQTEHPSIQTNNHDSNGVAVQIHPSRILPDFLQSVNLKYVKLGYHYLITHLLTLLLIPLMVGMLLEVGRMNPEDIWQLWIHLQFNLVSVLVCLAI

Protein Length: 97

Fln nts: AAATCCCCATTTTTTTTTGTTAGACTTGGGTTGATTGAACCCTAATACCGAA_-_ATGGGTCAAACTGAACACCCATCCATCCAAACGAACAATCACGACTCTAATGGAGTGGCCGTCCAGATCCATCCATCACGTATACTTCCTGATTTTCTCCAGAGTGTCAATCTGAAATATGTCAAACTCGGCTATCATTATCTTATAACCCATCTCCTGACTCTGCTCTTGATCCCTCTCATGGTGGGTATGCTTCTTGAAGTGGGACGGATGAACCCGGAAGATATCTGGCAGCTCTGGATCCATTTACAGTTCAATCTCGTCAGTGTTCTTGTCTGTTTGGCCATTCT

Fln Alignment:

Contig12126___IQTNNHDSNGVAVQIHPSRILPDFLQSVNLKYVK-XXXXXXXXXXXXXXXXXXXXXXXXEVGRMNPEDIWQLWIHLQFNLVSVL
A9NVH1________________VQESGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLISHAVYLFSVPVLLLAFSAEIGSLSQQDLWRLWEQPHFDLTTML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain