SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene10973

Length: 568 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uma_v2.0_unigene10973
TTGATAGGGAAGCTTCCTAAACAGTTTGCATCTTTTCAATCATTACGAGTTTTAAGTTTGGGTTGTAATAACCTTCAGGGTGGTATTTCTGATTGGCTCACAAATCTTCCTAATTTACAGGTGTTGGATTTATCCAATAATAATTTTACGGGGAGAATACCTTTTAATTTAGGGAGACTCTTAGGATTTCAAATACCTTCGTCTTCCCAGCTTACTGATAGTAGTACATTTTACACTGATGTGCAAGTGGTCATTAAAGGTTATGAGTATTCTCTAAAATATGTGTTGCTGACAAATACCATTTTGGATTTGTCTAGCAATAATTTTATTGGAGAAATTCCCTCAAGCATGGGAAATTTGAGTGACTTGCGGTTGTTGAATCTATCTAGAAATCAGTTGGAAGGGAAAATTCCTGCATCTCTAAGTGAGATATCTACTCTAGAGCAATTAGACTTGTCTAAAAATAATTTGAGCGGAGAGATTCCTCAAGAACTCTCTAAATTAACTATGTTGGCATACCTGGATGTATCATTTAACAGATTGTGTGGGCGAATCCCTAAAGGAACGC

Ace file of the UniGene uma_v2.0_unigene10973 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2715	10/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[S] COG4886 Leucine-rich repeat (LRR) protein	-	-	9.0e-10	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	serine-threonine protein plant-	-	-	0.0	55%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 95 aas, your sequence is shorter than subject: 189 - 818

Fln protein: LIGKLPKQFASFQSLRVLSLGCNNLQGGISDWLTNLPNLQVLDLSNNNFTGRIPFNLGRLLGFQIPSSSQLTDSSTFYTDVQVVIKGYEYSLKYVLLTNTILDLSSNNFIGEIPSSMGNLSDLRLLNLSRNQLEGKIPASLSEISTLEQLDLSKNNLSGEIPQELSKLTMLAYLDVSFNRLCGRIPKGT

Protein Length: 190

Fln nts: TTGATAGGGAAGCTTCCTAAACAGTTTGCATCTTTTCAATCATTACGAGTTTTAAGTTTGGGTTGTAATAACCTTCAGGGTGGTATTTCTGATTGGCTCACAAATCTTCCTAATTTACAGGTGTTGGATTTATCCAATAATAATTTTACGGGGAGAATACCTTTTAATTTAGGGAGACTCTTAGGATTTCAAATACCTTCGTCTTCCCAGCTTACTGATAGTAGTACATTTTACACTGATGTGCAAGTGGTCATTAAAGGTTATGAGTATTCTCTAAAATATGTGTTGCTGACAAATACCATTTTGGATTTGTCTAGCAATAATTTTATTGGAGAAATTCCCTCAAGCATGGGAAATTTGAGTGACTTGCGGTTGTTGAATCTATCTAGAAATCAGTTGGAAGGGAAAATTCCTGCATCTCTAAGTGAGATATCTACTCTAGAGCAATTAGACTTGTCTAAAAATAATTTGAGCGGAGAGATTCCTCAAGAACTCTCTAAATTAACTATGTTGGCATACCTGGATGTATCATTTAACAGATTGTGTGGGCGAATCCCTAAAGGAACGC

Fln Alignment:

Contig10973___LIGKLPKQFASFQSLRVLSLGCNNLQGGISDWLTNLPNLQVLDLSNNNFTGRIPFNLGRL
B8LQX6________________LTGEIPASIGNLSTLRLLNLSRNQLEGKIPASLGQISTLEQLDLANNYFSGKIPQELSNL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
260	42		57		1.0
278		42	42	14	1.0
318	42			57	1.0
319		42		57	1.0
356	33		66		1.0
361	16		50	33	1.0
368		66		33	1.0
388	66		33		1.0
389			33	66	1.0
419		50		50	1.0
446		66		33	0.997452
448		66		33	0.997452
455	66	33			0.997452
472			33	66	0.997452
478		66		33	0.997452
504		66		33	0.997452
506	33			66	0.997452
543	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain