SustainPineDB

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene10100

Length: 1896 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uma_v2.0_unigene10100 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8718	31/32

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase n=4 Tax=rosids RepID=A9PEC4_POPTR	-	-	76%
FL-Next	sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	3-ketoacyl- synthase	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	92%
Blast2go	very long-chain fatty acid metabolic process	GO:0000038	Biological Process	92%
Blast2go	cuticle development	GO:0042335	Biological Process	92%
Blast2go		GO:0008415	Molecular Function	92%
Blast2go	membrane	GO:0016020	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Very-long-chain 3-ketoacyl-CoA synthase	IPR012392	-	-
Sma3	FAE1/Type III polyketide synthase-like protein	IPR013601	-	-
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVH1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 333 - 530

Fln protein: KKLV*GTIHDLLFKKTGLKPKDIGILVVNCSLFNPTPSLSAMIVNRYKLRGNIRSFNLGGMGCSAGVIAIDLAKDLLQVHRSTYAIVVSTENITQNWYFGNKKSMLIPNCLFRVGGAAVLLSNKSSDRRRAKYKLVHVVRTHKGADDKAFNCVYQEQDEAGKLGVSLSKELMAIAGGALKTNITTLGPLVLPISEQLLFFATLVGRKVFNMKIKPYIPDFKLAFEHFCIHAGGRAVIDELQKNLHLKPIHVEASRMTLHRFGNTSSSSIWYELSYIEAKGRMRKGNRIWQIAFGSGFKCNSAVWQALRTVKSPADSPWADCVDQYPVKLMIE*

Protein Length: 334

Fln nts: TTAAAAAGCTTGTCTAGGGCACCATACATGACCTGCTTTTTAAGAAAACGGGGTTGAAACCCAAGGATATCGGGATTCTTGTGGTGAACTGCAGTCTATTCAATCCAACTCCTTCACTCTCTGCTATGATTGTGAATAGGTATAAGTTGAGGGGGAACATTCGGAGCTTCAATTTAGGTGGAATGGGTTGTAGTGCAGGAGTTATTGCCATTGATCTTGCCAAGGATTTGTTACAAGTTCATAGAAGCACATATGCAATAGTTGTGAGCACAGAAAACATTACTCAGAATTGGTATTTTGGCAACAAAAAGTCAATGTTGATACCCAATTGCTTGTTTCGTGTTGGGGGAGCTGCAGTTCTTCTTTCAAATAAGAGCTCCGACCGTCGGCGAGCAAAGTACAAGCTTGTCCATGTTGTGAGAACTCATAAAGGAGCAGATGATAAAGCATTCAACTGTGTTTATCAGGAGCAAGATGAAGCTGGCAAGCTCGGTGTGTCATTATCCAAAGAACTTATGGCCATAGCAGGAGGAGCGTTGAAGACTAATATCACAACTCTGGGACCTCTTGTTCTTCCCATCAGCGAGCAATTGCTTTTCTTTGCTACCCTTGTTGGGAGAAAGGTCTTCAATATGAAGATCAAACCCTATATTCCAGATTTTAAGCTTGCGTTTGAGCATTTCTGTATTCATGCTGGAGGAAGAGCAGTGATTGATGAGCTTCAGAAGAACTTGCATCTCAAGCCAATACATGTAGAGGCTTCGAGGATGACTCTACATCGCTTTGGCAACACTTCCTCAAGCTCAATTTGGTATGAGCTCAGTTACATTGAGGCCAAAGGACGTATGCGAAAAGGCAATCGGATTTGGCAGATTGCATTTGGCAGTGGATTCAAGTGCAACAGTGCTGTTTGGCAAGCACTTCGAACAGTGAAATCACCGGCTGATAGTCCTTGGGCTGATTGCGTTGATCAATATCCAGTAAAATTGATGATAGAATGA___GCAACTAGTCAAATGAGTTGAAACTCTAATACATCCAGTTCAACCTCAGATCTGCGTGTATCTCCTAGATATGTGTGCACTATGGAGTTCTGCAATCTTAGTATCTTTTATTGGTCCCCATTTGAAGGTTTCTCACATGGTTTAGCTTTGATTTTTAATTTTCTGCACTTCCAGACTATTGTTTCTTCGAGCTGTGTATCCAGCCCTTGAATTTCCAAACTGTGCCACATTGCAAGCTTTAAGAGGGATTTTGATTTTTTATTAGCTTTGCTCATGCAGACTTTGTAGGTAGGCTAGTAGCAGCATCAGGAAAGTTCATTGTTATTTGTATCAAATTCATTTGTGGGAATTGTTTCAATGGGCAATTCATGATATTGCCCCTTCACATTTCTCTCCAGAACTCCCATTCTTTGCAACTTTACTGAAATAGTTAGCTGAAAAATTTGTATCGTCAAAGTGCATGACTGTTGAACAATCGTATTTCAAACTAATCCTGTTTATGTGTTTTGCATTTACTTGATTGTCAAAGGTGATCTAGCCGATTACTTTCTAAAATGCAGTCATGTTAATGGAGCATGTGCAATCAACAAATGGGAATGCTTCCTGTGTAGTATCTGTTTCCTTCTCAATAACACCTTTCAGTTCAGAGACCTTAGTGTAGGACAATCCAGCTAATGAGGAGGTTTCCTGGTATTTTTCTTTGTAAGATCAATTACCTTTTCAAAATAGTGGTTTGTGGGTAGACAAGCAGCGGCAGTAGCTGATTTCATTATTCCTTTTTAAAGCAGCTCTACTGATATATGTATCTGGATAGCTGACATCAGAAAGGAAGTCCTTGACTTTGAACGATTACATTTTATGCTTTTTGCTCAATTGTCAAAGGTAACTTGAATTT

Fln Alignment:

Contig10100___DLLFKKTGLKPKDIGILVVNCSLFNPTPSLSAMIVNRYKLRGNIRSFNLGGMGCSAGVIAIDLAKDLLQVHRSTYAIVVSTENITQNWYFGNKKSMLIPNCLFRVGGAAVLLSNKSSDRRRAKYKLVHVVRTHKGADDKAFNCVYQEQDEAGKLGVSLSKELMAIAGGALKTNITTLGPLVLPISEQLLFFATLVGRKVFNM-KIKPYIPDFKLAFEHFCIHAGGRAVIDELQKNLHLKPIHVEASRMTLHRFGNTSSSSIWYELSYIEAKGRMRKGNRIWQIAFGSGFKCNSAVWQALRTVKSPADSPWADCVDQYPVKL
A9NVH1________________DELFEKCKVRPKDVGILVVNCSLFNPTPSLSAMIINHYKMRGNILSFNLGGMGCSAGIISLDLARDMLQAHPNSYAIVVSTEMITFNWYTGAERSMLMPNCFFRMGGAAILLSNKRRDRRRAKYSLSHIVRTHKGADDRSFRCVYQQEDDKRKKGLSVSKDLLEIGGHALKANITTLGPLVLPLSEQLLFLATLIGRKVLKMDHVKPYIPDFKLAFEHFCIHAGGKTILDELQNNLGLTNKHMEPSRMTLHRFGNTSSSSLWYELAYMEAKHQIKKGDRVWQIAFGSGFKCNSAVWKTLRTVKRSTKNPWLDCVDRYPVEI

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
300		25		75	0.996473
463		75		25	0.996473
1468			14	85	0.993533
1509	14		85		0.993533
1579	40	60			1.0
1590		50		50	1.0
1591	50			50	1.0
1592			50	50	1.0
1593	50			50	1.0
1594	50		50		1.0
1598		50	50		1.0
1599		50		50	1.0
1601	50			50	1.0
1602	50			50	1.0
1603	50			50	1.0
1605	50		50		1.0
1606		50	50		1.0
1610		33		66	0.997452
1611	33			66	0.997452
1612	33	66			0.997452
1613	33			66	0.997452
1614	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain