SustainPineDB

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene9702

Length: 1733 nt

UniGene Fasta

Ace file of the UniGene uma_v2.0_unigene9702

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8007	41/42

Source	Descriptions	Term	Type	e value	Identity
AutoFact	homeodomain-leucine zipper protein 56 [Glycine max]	-	-	8.00001e-41	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	homeobox-leucine zipper protein athb-6-like	-	-	0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	62%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	62%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	62%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	62%
Blast2go	nucleus	GO:0005634	Cellular Component	62%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3		IPR012287	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV37

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 286 - 309

Fln protein: RRDEEECSGTGQQTRKKRRLSLQQVRSLEKTFEVENKLEPERKLQLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGQLKLNYECLKSNFDAIKQENQKLTSELNYLKEKWEETQNLQRDNSDLNKENEEKKVFGMGEDKAISDTKSLDKTMVCKQDHGDAEIKVTGVAMIFNEKLEGSESESSAIVNEQADNNNNNNSPHSIDSHISNLSLNCCYVPGPPVASSAIDEGLMEALCPKGLIRPKEEHHHHQDFRADANFVQEDPACNFFNVDDTTVTLPWWEWA*

Protein Length: 287

Fln nts: ATGTTTGTTGGTTTTGGAAGTGGCAGGGTCATTTGCTCCCAAGATCTCATGCATCCGGGGGCTGCCCCGCCTATGGCTTTGCATCGCTGGCTTCTGGGGAATGGAAGAGCAAAGTGAGGCGGAGGCTGAGGATGATCAGAATCAACCCCAGGAGGAGGAGGAGCCTGGAGGAAGTTAAGTTAGCATCATGGGAATGCGGAACAAGGCATTGGGTTTTGGATTCACCAGCAGCATCACATGTTTGTCTAGATAACGTTTCGTTTTGAGATCTCTGCATATCCCTACGCGACGCCTCCGTCCACGGATTCATGGGGCAGCAGTTACAGGAATAAAGAAGGGAGTGGTACTACTACTGCCAGGATCTAGGGCCACATTCAAACCCAAATAAGGATATTGCCATCTTCTTGATAATCAACCTACGAGGACTAAAATGGAAACAACAGGGACCTTCAAATTTTCTATTCCCTCTCCTCTGGTTGGGTGCCCAGGCAATATTCATGATGACG_-_ATGAAGAAGAGATGAGGAGGAGTGCAGCGGGACTGGGCAGCAAACGAGGAAGAAGAGGAGGCTGAGCTTGCAGCAGGTGAGATCTCTGGAGAAAACCTTTGAGGTTGAGAACAAGCTTGAGCCAGAAAGGAAATTACAACTTGCACAGGAATTGGGCCTCCAGCCCAGACAGGTTGCTGTTTGGTTCCAGAATAGGCGTGCTCGCTGGAAAACCAAGCAGCTCGAGAGAGATTACGGACAGCTTAAACTCAATTATGAGTGCCTTAAATCTAACTTCGATGCCATCAAGCAGGAAAACCAGAAGCTCACATCTGAGCTCAACTATCTGAAGGAAAAGTGGGAGGAAACTCAGAATCTGCAAAGGGATAACAGCGATCTCAACAAAGAAAATGAAGAAAAGAAGGTTTTTGGCATGGGGGAAGATAAAGCTATATCAGATACCAAATCACTTGACAAAACAATGGTGTGTAAACAAGATCATGGCGATGCTGAGATCAAGGTTACAGGCGTAGCCATGATATTCAATGAAAAATTAGAGGGGTCGGAGAGCGAGAGCAGTGCCATAGTGAACGAGCAGGCAGATAATAATAACAACAACAACAGTCCCCATTCCATCGATAGTCACATTTCTAATTTGTCTCTGAACTGTTGTTATGTTCCGGGGCCTCCTGTGGCTTCTAGTGCTATTGATGAAGGCCTAATGGAGGCTCTATGCCCGAAAGGCCTCATTCGACCAAAGGAAGAACATCATCACCATCAAGACTTCAGAGCAGATGCTAACTTTGTTCAAGAGGATCCGGCCTGCAATTTCTTCAATGTGGACGATACAACTGTTACTCTACCGTGGTGGGAATGGGCTTGATCAGCTCTAATTTCTTTGGCCTGGTAAATAATCTACGAAGAAGTCAAACGAGCTATGAATGTCAGAGCATCAATGTCGGTTTTGGTAGTGAGTGGTGAATGACTACTAATGGCTACTCAGCTGTCTGCATGTCAACAATAAGCAAAGAATAAAGTGGTGATTGTAATCCACAATCTGCTGCTCTAATGGTGTTCTCAGTGGGAATCGATTTCAGATCAACAAACAGTTTTGTAGGGCATATCAGGCATAGTTTCTAGCTAGTTAGGTTTGCAAATTATTGCTGCATTTCCCGGAGATTATGAAAGACTGTTACAAAGAATGTATGTTGGTTTTGCATATGTTGGATTAATTATTTCCAGCCAGTA

Fln Alignment:

Contig9702___EECSGTGQQTRKKRRLSLQQVRSLEKTFEVENKLEPERKLQLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGQLKLNYECLKSNFDAIKQENQKLTSELNYLKEKWE--ETQNLQRDNSDLNKENEEKKVFGMGEDK
A9NV37_______________DDCIHLGE---KKRRLTLEQVRALEKNFEIANKLEPEKKMQLAKALGLQPRQIAVWFQNRRARWKTKQLEKDFNVLKQDYDALKQDYDNLMEENNNLQAMIERMSSKSQSCNDQKFQANSSKLQKDDQDLQLLMMSATK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
526			75	25	0.996473
607		83		16	0.994512
660	75		25		0.996473
1486		10		90	0.90298
1517	83		16		0.994512
1537	83		16		0.994512
1554	33			66	1.0
1569	83		16		0.994512
1628	20			80	0.995493
1713	33			66	0.997452
1715	33			66	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
150	163	AGG AGG AGG AGG AG	14
1096	1108	AAC AAC AAC AAC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain