SustainPineDB

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene5360

Length: 2225 nt

UniGene Fasta

>uma_v2.0_unigene5360
AATAGAGAGGTATGAACTTCAAGAGGATAAACTGAAACATTTTCCGTGGCTCAATCTCTGCCCTTTCCGTGCCCATAGATCCAGAAACCTGGATAGTCTTTGGAATTCTGCCATAAGACATCCTCTTGTACTGCTGAAGAGATCATATTTGAGGTGATTCAAAGTTTCAATCATCAGATATAAATCTATTATTTGGTGATCCTTCGTAAGAAAGGTTGTTGAAGAAGAAATGAACTGTTTCATCTTGTCCGAGAAAACTGCGTCAGAGGCAGCATTTCATCCCATTTGTTCTGCATGGAAATTCTAGTTTTGTATTTATGCTCCAAATATATGCTATTAGAACTTTAAGCTGAGAGGGACTCTTTAGTAGTGTCCCAGGTGAACACTATTATTGGCAGGAAAACATACAGCAAATACGCCTGATAACAGTGGCTGAGTATTTGGTCTGGAAGGAAAGCTTTGAAGGCAAGAGATTACAGAGCTATCGAGATGTCTCTGAGAAGCATAATGCGTGAGATTAAGGAAGTGCGAAATGGAATTGGTAACATCTCTAGGAGACGAAGTTTTGACATGAGGGTTTCACACAACCACAGGGCAAGGTCTCAGGCAACCATAGATGATACTCTGAGTCGAGTTCTCTTTGTCCAACAGAGTCGATGGGCCAATCTTCCACCAGAATTACTTCATAATGTGATTCAGCGCTTGGAAACTAGTGAAGGTATCTGGCCGGCTCGAAAAAATGTAGTTGCCTGCGCTGGCGTCTGCAAGTCTTGGCGTGAGATAACTAAAGAAGTTGTCAAAACACCGGAGCAATGTGGAAAGCTTACATTTCCAATATCGTTGAAACAGCCTGGACCACGTGATCCACCCATGCAATGTTTTATCAAACGAGATCGGTCAGCTTCTACATACAAATTGTTCCTGGGCCTAACTCCTGCTTTGCTTGTTGAAAATGGGAAATTCCTCTTTGCTGCCAAAAAAGTTAGACATGCCACAAGCACAGATTATATAATTTCTTTGAGTTCCGAGGACTTCTCCCGAGCAAGTAACACATATGTGGGAAAATTGAGGTCAAACTTCCTGGGTACCAAGTTCACAATATATGATAGCCAACCTCCGCAGAGTGGTGCAGTAGTCTTAACTAGCCGGCCAAGTCGGAGATTTTATTCCAAGCAAGTATCTCCAAGAGTACCTGCTGGCAGCTATAACATAGCAAACATTGTTTATGAACTCAATGTCCTTGGTACTAGAGGGCCAAGGAGGATGCAGTGCACAATGCATTCTATTCCAGCTTCTTCTATTCAGGTTGGAGGAAATGCGCCAACACCGACAGAATTTCCTCGTTCATTGGATGAATCATTTTCCTTACCCTTTTCCAAAGAACCCCTTATAGATTTCAGCAGCTCTAGCTTATCAGAAATTCCAATCAATGTTGAGAGCAAAGATGTACCGCTTGTATTGAAAAATAAGGCACCGAGATGGCATGAACAGTTGCAGTGTTGGTGCCTGAATTTCAAGGGACGTGTGACAGTGGCATCTGTAAAAAACTTTCAGCTAGTTGCTTCCGTGGAACCTTCGCAGTTGGTGACACAAGCTGACCAGGACAAAGTTATCCTTCAGTTTGGGAAGATTGGAAAAGACATATTTACCATGGACTATCGCTACCCGTTGTCTGCTTTTCAGGCCTTTGCTATATGCTTAAGCAGTTTTGACACAAAACTGGCTTGCGAATGAGAGCAATGACCTTGGTCCATTGAAGTTGCTCATTCCGTACAAAATTAGGATATCCAGGTGCAGTATTATAAGACCAATTAATCCGCAGAATACACCACCAGATACTTATGTAACATGTTCACAAGGATGACAAGGATTTTAGGGGTGATAAAATCCTCAGTTTTTGCACATGGGTATGTGTAGCATTTTGGAATCAGTTTCATAGGGAAACAACATGTTAATGTAATATTGCAGATTATGGTCAGGGATCTTCCAAGTTCTGTAACACACTAGTTGGCCTGTTTGTGTTGCTCTCTTTTGAGAAATAGAGACACGAAACTAGTGGCTATCATGCCTATGTAACTTGAGAGTTCTATAACACACTAGTTGGCCTATTTGTGTTTCTCTCTTTTGAGAAATAGAGACACGCAACTAGTGGCTATCATGCCTATGTAACTTGAGAAATTTATATTCTCGTAAAGCAATTTGGAACCAGTTTCATGGGAAAAAAC

Ace file of the UniGene uma_v2.0_unigene5360

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16934	27/49
SustainPine v2.0	sp_v2.0_unigene22493	22/49

Source	Descriptions	Term	Type	Identity
AutoFact	TLP domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJE0_MALDO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	tubby-like f-box protein 5-like	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	Tubby, C-terminal	IPR000007	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Tubby, C-terminal, conserved site	IPR018066	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUX5

Fln msg:

Fln protein: MSLRSIMREIKEVRNGIGNISRRRSFDMRVSHNHRARSQATIDDTLSRVLFVQQSRWANLPPELLHNVIQRLETSEGIWPARKNVVACAGVCKSWREITKEVVKTPEQCGKLTFPISLKQPGPRDPPMQCFIKRDRSASTYKLFLGLTPALLVENGKFLFAAKKVRHATSTDYIISLSSEDFSRASNTYVGKLRSNFLGTKFTIYDSQPPQSGAVVLTSRPSRRFYSKQVSPRVPAGSYNIANIVYELNVLGTRGPRRMQCTMHSIPASSIQVGGNAPTPTEFPRSLDESFSLPFSKEPLIDFSSSSLSEIPINVESKDVPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVASVEPSQLVTQADQDKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKLACE*

Protein Length: 416

Fln nts: AATAGAGAGGTATGAACTTCAAGAGGATAAACTGAAACATTTTCCGTGGCTCAATCTCTGCCCTTTCCGTGCCCATAGATCCAGAAACCTGGATAGTCTTTGGAATTCTGCCATAAGACATCCTCTTGTACTGCTGAAGAGATCATATTTGAGGTGATTCAAAGTTTCAATCATCAGATATAAATCTATTATTTGGTGATCCTTCGTAAGAAAGGTTGTTGAAGAAGAAATGAACTGTTTCATCTTGTCCGAGAAAACTGCGTCAGAGGCAGCATTTCATCCCATTTGTTCTGCATGGAAATTCTAGTTTTGTATTTATGCTCCAAATATATGCTATTAGAACTTTAAGCTGAGAGGGACTCTTTAGTAGTGTCCCAGGTGAACACTATTATTGGCAGGAAAACATACAGCAAATACGCCTGATAACAGTGGCTGAGTATTTGGTCTGGAAGGAAAGCTTTGAAGGCAAGAGATTACAGAGCTATCGAG_-_ATGTCTCTGAGAAGCATAATGCGTGAGATTAAGGAAGTGCGAAATGGAATTGGTAACATCTCTAGGAGACGAAGTTTTGACATGAGGGTTTCACACAACCACAGGGCAAGGTCTCAGGCAACCATAGATGATACTCTGAGTCGAGTTCTCTTTGTCCAACAGAGTCGATGGGCCAATCTTCCACCAGAATTACTTCATAATGTGATTCAGCGCTTGGAAACTAGTGAAGGTATCTGGCCGGCTCGAAAAAATGTAGTTGCCTGCGCTGGCGTCTGCAAGTCTTGGCGTGAGATAACTAAAGAAGTTGTCAAAACACCGGAGCAATGTGGAAAGCTTACATTTCCAATATCGTTGAAACAGCCTGGACCACGTGATCCACCCATGCAATGTTTTATCAAACGAGATCGGTCAGCTTCTACATACAAATTGTTCCTGGGCCTAACTCCTGCTTTGCTTGTTGAAAATGGGAAATTCCTCTTTGCTGCCAAAAAAGTTAGACATGCCACAAGCACAGATTATATAATTTCTTTGAGTTCCGAGGACTTCTCCCGAGCAAGTAACACATATGTGGGAAAATTGAGGTCAAACTTCCTGGGTACCAAGTTCACAATATATGATAGCCAACCTCCGCAGAGTGGTGCAGTAGTCTTAACTAGCCGGCCAAGTCGGAGATTTTATTCCAAGCAAGTATCTCCAAGAGTACCTGCTGGCAGCTATAACATAGCAAACATTGTTTATGAACTCAATGTCCTTGGTACTAGAGGGCCAAGGAGGATGCAGTGCACAATGCATTCTATTCCAGCTTCTTCTATTCAGGTTGGAGGAAATGCGCCAACACCGACAGAATTTCCTCGTTCATTGGATGAATCATTTTCCTTACCCTTTTCCAAAGAACCCCTTATAGATTTCAGCAGCTCTAGCTTATCAGAAATTCCAATCAATGTTGAGAGCAAAGATGTACCGCTTGTATTGAAAAATAAGGCACCGAGATGGCATGAACAGTTGCAGTGTTGGTGCCTGAATTTCAAGGGACGTGTGACAGTGGCATCTGTAAAAAACTTTCAGCTAGTTGCTTCCGTGGAACCTTCGCAGTTGGTGACACAAGCTGACCAGGACAAAGTTATCCTTCAGTTTGGGAAGATTGGAAAAGACATATTTACCATGGACTATCGCTACCCGTTGTCTGCTTTTCAGGCCTTTGCTATATGCTTAAGCAGTTTTGACACAAAACTGGCTTGCGAATGA___GAGCAATGACCTTGGTCCATTGAAGTTGCTCATTCCGTACAAAATTAGGATATCCAGGTGCAGTATTATAAGACCAATTAATCCGCAGAATACACCACCAGATACTTATGTAACATGTTCACAAGGATGACAAGGATTTTAGGGGTGATAAAATCCTCAGTTTTTGCACATGGGTATGTGTAGCATTTTGGAATCAGTTTCATAGGGAAACAACATGTTAATGTAATATTGCAGATTATGGTCAGGGATCTTCCAAGTTCTGTAACACACTAGTTGGCCTGTTTGTGTTGCTCTCTTTTGAGAAATAGAGACACGAAACTAGTGGCTATCATGCCTATGTAACTTGAGAGTTCTATAACACACTAGTTGGCCTATTTGTGTTTCTCTCTTTTGAGAAATAGAGACACGCAACTAGTGGCTATCATGCCTATGTAACTTGAGAAATTTATATTCTCGTAAAGCAATTTGGAACCAGTTTCATGGGAAAAAAC

Fln Alignment:

Contig5360___MSLRSIMREIKEVRNGIGNISRRRSFDMRVSHNHRARSQATIDDTLSRVLF----------VQQSRWANLPPELLHNVIQRLETSEGIWPARKNVVACAGVCKSWREITKEVVKTPEQCGKLTFPISLKQPGPRDPPMQCFIKRDRSASTYKLFLGLTPALLVENGKFLFAAKKVRHATSTDYIISLSSEDFSRASNTYVGKLRSNFLGTKFTIYDSQPPQSGAVVLTSRPSRRFYSKQVSPRVPAGSYNIANIVYELNVLGTRGPRRMQCTMHSIPASSIQVGGNAPTPTE-FPRSLDESF-SLPFSKEPLIDFSSSSLSEIPINVESKDVPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVASVEPSQLVTQADQDKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKLACE
A9NUX5_______________MTVKNIFQDMK---GSIGSISRR-SFEVKFL---RSRSQSAVDDLHYRSNANNKNNSNNGGLQCSLWVNMPPELIRDVIQRIEESESSWPLRKSVVACAGVCRTWRQITKELVKIPEMSGKLTFPISLKQPGSRDPSVQCFIKRDRATSTYQLYLSLTPTLS-DNGKFLLAARKFRRATSTEYIISLDAEDMSRGSNTYVGKLRSNFLGTKFTIYDSQPPHSGAIASTSRAGRRVGAKQVSPRVPAGSYNIAHIGYELNVLGTRGPRRMQCIMHSIPASAVQPGGSAPTPVEPSITSLDHSLASCPTFGSKSCILESPSISEPLTNSNSKDEPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAPEPNPSVSQNDYDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
754	20	80			0.995493
757		20		80	0.995493
906		83		16	0.994512
916	85			14	0.993533
919	14		85		0.993533
922		85		14	0.993533
926			85	14	0.993533
927			85	14	0.993533
929	14	85			0.993533
932	85			14	0.993533
933		85	14		0.993533
935		85	14		0.993533
937	14			85	0.993533
1321	50		50		1.0
1334	20		20		0.99255
1559		20		80	0.996423
1689		20		80	0.996423
1703	80		20		0.997017
1715	83			16	0.995451
1922			62	37	1.0
2004		11		88	0.923564
2205	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain