SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene4691

Length: 319 nt

UniGene Fasta

>uma_v2.0_unigene4691
CACTGGGGACAGGAGATCCATAATCATATACTATTAAGTGGTTTTGAATCAGATATTGATGTTATGAATGCCGTTATAGACATGTATGCAAAATGTGGAAGCATAAAACATGCAAGACAAGCATTTGATAGACTGTCAGGGCGAGACTGTGTCTCTTGGAATGCAATGATTTCGGGCTATGCTGCACATGGGTTTGGGGAAGATGTCATTGCACTCTTTCGTCACATGCAACTGGAAGAGGTAAAGCCAGATTATATCACCTTTACTGGTGTTCTTTCTGCGTGCAGCCATGCAGGCATGGTGGATCAAGGGTGGGAAT

Ace file of the UniGene uma_v2.0_unigene4691

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19913	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LW63.1\|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 dbj\|BAB02277.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE76753.1\| pentatric	-	-	4.0e-26	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.07154e-34	71%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Translation elongation factor EFTs/EF1B, dimerisation	IPR014039	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	PDZ-binding protein, CRIPT	IPR019367	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 106 - 232

Fln protein: HWGQEIHNHILLSGFESDIDVMNAVIDMYAKCGSIKHARQAFDRLSGRDCVSWNAMISGYAAHGFGEDVIALFRHMQLEEVKPDYITFTGVLSACSHAGMVDQGWE

Protein Length: 107

Fln nts: CACTGGGGACAGGAGATCCATAATCATATACTATTAAGTGGTTTTGAATCAGATATTGATGTTATGAATGCCGTTATAGACATGTATGCAAAATGTGGAAGCATAAAACATGCAAGACAAGCATTTGATAGACTGTCAGGGCGAGACTGTGTCTCTTGGAATGCAATGATTTCGGGCTATGCTGCACATGGGTTTGGGGAAGATGTCATTGCACTCTTTCGTCACATGCAACTGGAAGAGGTAAAGCCAGATTATATCACCTTTACTGGTGTTCTTTCTGCGTGCAGCCATGCAGGCATGGTGGATCAAGGGTGGGAAT

Fln Alignment:

Contig4691___GQEIHNHILLSGFESDIDVMNAVIDMYAKCGSIKHARQAFDRLSGRDCVSWNAMISGYAAHGFGEDVIALFRHMQLEEVKPDYITFTGVLSACSHAGMVDQG
D5AB53_______________GKVLHLYIIKSGFESDVFVGSTLIDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain