SustainPineDB

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene4064

Length: 1692 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uma_v2.0_unigene4064 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18383	58/59

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase, CAZy family GT47 n=1 Tax=Populus trichocarpa RepID=B9GRC8_POPTR	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	xyloglucan galactosyltransferase katamari1-like	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	endomembrane system organization	GO:0010256	Biological Process	78%
Blast2go	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	78%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	78%
Blast2go	xyloglucan biosynthetic process	GO:0009969	Biological Process	78%
Blast2go	fucose biosynthetic process	GO:0042353	Biological Process	78%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	78%
Blast2go	integral to Golgi membrane	GO:0030173	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase, class-B, conserved site	IPR001018	-	-
Sma3	Peptidase S26B, eukaryotic signal peptidase	IPR001733	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT31

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 349 - 155

Fln protein: MDWLVSRPEWEINKGHDHFLVGGRITWDFRRLSDSESDWGSKLLFLPAMKNMTMLVVEASPWNRNDMAIPYPTYFHPAKDSDIIEWQNRMRGMNRSSLFSFAGAPRPDIPTSIRGQIMDQCRKSNVGKLLECDLGESKCHSPSTIMKMFQESVFCLQPQGDSYTRRSFFDSMLAGCIPVMFHPGSAYAQYIWHLPKNYSTYSVFIPEDDIRKRNISIEQRLLQIHPEQVRRMRDEVIKLIPAIVYADPRSKLNNFKDAFDIAVQSMIDKVTKLRLDIIEGREIEDYQEDEGSEQSARKWEGLRREGEQTWDEFFSKPKDEASGQPESNSAKQESPGINQDQHQAEEKA*

Protein Length: 350

Fln nts: TTTTATGCGGGTCTTGATATCTCAAGACATCTGTGGGGTTATAATATATCTGTTAGAGATGCTGCGTCGTTGCAACTC_-_ATGGATTGGTTGGTTAGCAGGCCGGAATGGGAGATCAATAAAGGGCATGACCATTTTCTTGTTGGGGGAAGAATAACTTGGGATTTCAGGAGGCTTTCTGATTCCGAGAGTGATTGGGGCAGCAAGCTTCTGTTTTTGCCTGCTATGAAAAACATGACCATGCTAGTCGTTGAGGCCAGTCCGTGGAATCGGAACGACATGGCAATCCCTTATCCCACATACTTCCATCCTGCCAAGGATTCTGATATCATCGAATGGCAGAACAGAATGCGGGGCATGAATCGTTCATCGCTGTTTTCCTTTGCTGGGGCCCCTCGCCCCGACATACCAACATCGATCAGGGGGCAGATCATGGATCAGTGCAGAAAATCTAATGTAGGTAAGCTCTTGGAATGTGATCTTGGTGAGAGCAAATGTCACTCACCGAGTACTATTATGAAGATGTTCCAGGAGTCTGTGTTCTGCTTGCAGCCCCAGGGTGATTCCTATACGCGCAGATCCTTTTTCGACTCCATGTTGGCTGGTTGTATTCCGGTCATGTTCCATCCTGGTTCTGCATATGCCCAGTATATCTGGCATCTTCCCAAGAATTATTCAACTTATTCGGTGTTTATTCCTGAGGACGACATCCGGAAGAGAAATATTAGCATAGAGCAGAGACTGCTTCAGATCCATCCCGAACAGGTGAGAAGGATGAGGGATGAGGTGATAAAGCTCATTCCAGCTATAGTGTATGCTGATCCCCGCTCTAAGCTAAACAATTTCAAGGATGCATTTGATATTGCTGTTCAATCCATGATTGATAAAGTTACCAAACTTAGATTGGATATTATAGAAGGCCGAGAAATAGAAGATTATCAAGAAGATGAAGGATCTGAACAATCTGCAAGGAAGTGGGAAGGATTGCGCAGAGAAGGGGAACAAACATGGGATGAGTTTTTCTCTAAGCCAAAGGATGAGGCATCTGGGCAACCTGAATCAAATAGTGCTAAACAGGAATCTCCAGGAATTAATCAAGATCAGCATCAGGCAGAGGAGAAAGCATGAAGTAAGCCAGCGGCAGAAGGTCTATACAATCGGTGGGAAGGGTCCAATATATTTTTGAAGATTAAGTTTACATGATTTTTTGGTAGCAGCTGGAACTGGAACTAATCCTCTGACCAAGGCCTTGGACAATTTTCAAACATTTGCATTCCTGAGTAGTAGTTAGATGGTTCGAGAATTGTACATTCTTAACATTGGCGGATTGCACCCTTCATGATTGCCTGGAGGTTATTGCAGTTGGTTCAGTGGGTACCTGGGTAAGGACTTGGCTGTCATAACATGGGCCATTGTCCTGCTGATTATTTTTTAATTGTATCATTGTGCATATTGCAATTCAATAATGTTTCATCCTATCGAGGCACTTAATTATCCACAATAATGGAGATTAGGAATTGTTATCATGATGCTGGTATCATTTTCAGACTGGTAGATTGTTTTAATGTAAGCTGCCAGGAGTTTTATAGGGCTCAGGAACACTGATAAACCTTTTTGTAAGTGATCGGCCAAGTGTTGAGGTTGATCCTTTATCAATTACTCCTTATTTATTAAAAAATGGGCAATTGAAGTTTC

Fln Alignment:

Contig4064___KC-HSPSTIMKMFQESVFCLQPQGDSYTRRSFFDSMLAGCIPVMFHPGSAYAQYIWHLPKNYSTYSVFIPEDDI--RKRNISIEQRLLQIHPEQVRRMRDEVIKLIPAIVYADPRSKLNNF---KDAFDIAVQSMIDKVTKLR
A9NT31_______________KCSHRPEAVMTELLKANFCLQPSGDSPTRRSTFDALIAGCIPVFFRRDSAYEQYTWHLPSDPETYSVFIAEERMVNSRKALKIEDVLSSYSQEKIRKMREKIVEIMPSLLYMNFAEKDGGEIFPRDAFDLSIEGMLRKVMSSR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1624		83		16	0.994512
1627	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain