SustainPineDB

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Assembly info
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Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene2795

Length: 444 nt

UniGene Fasta

>uma_v2.0_unigene2795
TACTTGAGCATGCTATGGCATATGAAGGATCTGTTGAGTTGCATGCAACTGCCTCAAAGGGGCTACTAAATGTTGCTTCTCGGCATCCTCAGATGATTGCTTCACGATATGCTGAACGTCTTCCATGGCTTAGACAATTCTTAGGTCACATAGACGCTGATACTCGGGAATCCATATCTCGTTTATTGGGTATTACTTGTTCAGCCTTATCAATTTCTTCAGCATCTGTTTTGATTCACGAACTTTGCTCCACCTTTGAAGTTCTCAACAAAGTCAGATTTGAGGATAGTCATGGAGCAATCTGTGCTACTGGATATGTGGTAGCCCAGTGCATGACAGGAATGCCTTCTGTTGGCAGAGAATTATTAGAAACTTCTGTAATGGTTTTGGTGGACACAATCAAGTCCCAAACTTTACCATTGGCTGGAGCAGCTGCAGAGGCAT

Ace file of the UniGene uma_v2.0_unigene2795

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7869	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	50%
Blast2go	proteasome-associated protein ecm29 homolog	-	-	2.11744e-37	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	2.11744e-37	66%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GG71

Fln msg: Distance to subject end: 1052 aas, your sequence is shorter than subject: 147 - 1847

Fln protein: LEHAMAYEGSVELHATASKGLLNVASRHPQMIASRYAERLPWLRQFLGHIDADTRESISRLLGITCSALSISSASVLIHELCSTFEVLNKVRFEDSHGAICATGYVVAQCMTGMPSVGRELLETSVMVLVDTIKSQTLPLAGAAAEA

Protein Length: 148

Fln nts: TACTTGAGCATGCTATGGCATATGAAGGATCTGTTGAGTTGCATGCAACTGCCTCAAAGGGGCTACTAAATGTTGCTTCTCGGCATCCTCAGATGATTGCTTCACGATATGCTGAACGTCTTCCATGGCTTAGACAATTCTTAGGTCACATAGACGCTGATACTCGGGAATCCATATCTCGTTTATTGGGTATTACTTGTTCAGCCTTATCAATTTCTTCAGCATCTGTTTTGATTCACGAACTTTGCTCCACCTTTGAAGTTCTCAACAAAGTCAGATTTGAGGATAGTCATGGAGCAATCTGTGCTACTGGATATGTGGTAGCCCAGTGCATGACAGGAATGCCTTCTGTTGGCAGAGAATTATTAGAAACTTCTGTAATGGTTTTGGTGGACACAATCAAGTCCCAAACTTTACCATTGGCTGGAGCAGCTGCAGAGGCAT

Fln Alignment:

Contig2795___LEHAMAYEGSVELHATASKGLLNVASRHPQMIASRYAERLPWLRQFLGHIDADTRESISRLLGITCXXXXXXXXXXXXHELCSTFEVLNKVRFEDSHGAICATGYVVAQCMTGMPSVGRELLETSVMVLVDTIKSQTLPLAGAAAEA
B9GG71_______________LEHAMAYEGSVELHATASKALITIGSYLPEMIASHYVPRISWLKQLLSHVDLDTRESAARLLGIACSAIPPATSSDLISELLSAISKTSNLRFEALHGILCAIGYATAECMSIAVAIPGTLFQKILKCLTDIANSETATLASIAMQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain