SustainPineDB

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene1779

Length: 1561 nt

UniGene Fasta

Ace file of the UniGene uma_v2.0_unigene1779

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18368	55/55

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SRC2 protein n=1 Tax=Taiwania cryptomerioides RepID=A7XAJ8_9CONI	-	-	1.99965e-42	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	protein	-	-	0.0	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	0.0	59%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	0.0	-
Sma3	C2 membrane targeting protein	IPR018029	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRE3

Fln msg:

Fln protein: MASRSMELTLISARDLNNTNILSKTKAYAVAWISNDHKNRQKTPLDKDNGTDPTWNHVMKFTLDEAALQQGRLVLEIVIYADATFGDKEIGRVSVPLNEFLRPAGGNKGATTSAQFVSYQVRKPSGKAKGVLNLSVKLAEKSEVKQQQQQPQAVAGSYGWGKAEPVTAYPAGSYGAGKSEPVAAYPAGSYGAANAEPVTAYPAYPPPSSSSHPPPYPPPNNQYPPPQYPPQAGYPPPPPHYQGYPPPPYQGYPPNQGYPPYQGYPPVVPAAQQPPKKNNRLGMGLGAGLLGGALGGLLLGDIVSDSYDGGFDGGDFGGGGFDGGF*

Protein Length: 327

Fln nts: GACTTCGTTCGAAACATCTCTGAGATTCGCGTGTGAAAGACGCGGAGCATCTCGCTACCGGAGGTTTCATCTCTATAAGAACGTTGCGGATGTCTATTACATTCAATCAATTTGTCCCCTTTCCCCTGTTCGGTTCACCGCTCTGAAATCTCACTCGGATTCTTCTCCAATTTCATTTTGCAAATTCTATCATTTTCTTCCTCTGTATTGAATTCATCGTGGTGCG_-_ATGGCGTCCCGGAGCATGGAGCTGACGCTGATCTCGGCGCGCGATCTGAACAATACGAACATTCTCTCTAAGACGAAGGCCTACGCAGTCGCCTGGATCTCCAACGATCACAAAAACAGGCAAAAAACACCCTTGGACAAGGACAACGGCACCGATCCCACCTGGAACCACGTTATGAAGTTTACTCTCGACGAGGCAGCCCTGCAGCAGGGCCGCCTGGTTCTCGAGATCGTAATCTACGCCGACGCTACCTTCGGCGACAAAGAGATCGGTCGCGTTAGCGTCCCATTGAACGAATTCCTCAGGCCCGCTGGTGGCAACAAGGGCGCTACCACCTCCGCGCAGTTCGTCAGCTACCAGGTCCGAAAACCCTCTGGAAAAGCCAAGGGGGTTCTCAATCTTTCTGTAAAATTGGCCGAAAAGTCTGAGGTCAAGCAGCAGCAACAGCAGCCGCAGGCAGTTGCAGGGTCATATGGTTGGGGCAAGGCGGAGCCTGTGACAGCATATCCTGCAGGGTCATATGGTGCGGGAAAGTCTGAGCCCGTGGCAGCGTATCCGGCAGGTTCATACGGGGCGGCTAACGCAGAGCCGGTGACCGCTTACCCAGCTTACCCACCGCCCAGCTCGTCCTCGCACCCGCCGCCTTATCCGCCACCTAATAACCAGTACCCTCCACCACAGTATCCACCCCAGGCAGGCTATCCCCCGCCTCCCCCTCACTACCAGGGTTACCCTCCGCCTCCCTACCAGGGTTACCCTCCTAACCAGGGCTACCCGCCGTATCAGGGGTATCCGCCCGTTGTTCCTGCAGCGCAGCAGCCGCCTAAGAAGAATAATAGACTCGGGATGGGTTTGGGGGCAGGCTTACTTGGCGGAGCTCTTGGTGGTTTGTTGCTCGGAGACATCGTCAGCGATTCTTACGATGGAGGATTTGATGGTGGCGATTTTGGGGGCGGCGGTTTTGATGGTGGATTTTAG___GCCATTACCCTCCGAAATCAGCCTTGGCCGACCGCTGAAATACAAGATTCTGGAAATTCTTACTTTCGGCAGGTTTTTCTCCAGAGGATATGAAACTCTGATATAGGTTAGCAAATAAATGAAAAATATGTATATGTTCTGCATCTTAAATTCAATTGACTTGATTTTGGTGAAGTTGCTTGTAGCCTGCAAGGCCTATGCTTTGGTTGATTCATGCAGAGCATGCGGTTGCTTGTATTTGAGAATCTGTAAAACATGTAATGGTTTTTTCTTTTTTCCCTCTGAATTTTGCAGGGTTTATGTGAAATATTGTGTATAAGATATATTGTATTTTTCGCATTGTTTTGTTGAAGGTCT

Fln Alignment:

Contig1779___MASRSMELTLISARDLNNTNILSKTKAYAVAWISNDHKNRQKTPLDKDNGTDPTWNHVMKFTLDEAALQQGRLVLEIVIYADATFGDKEIGRVSVPLNEFLRPAGGNKGATTSAQFVSYQVRKPSGKAKGVLNLSVKLAEKSEVKXXXXXXXAVAGSYGWGKAEPVTAYPAGSYGAGKSEPVAAYPAGSYGAANAEP
B8LRE3_______________MESRSMEITLISARDLNNTNILSKTKAYAVAWISNDHRNRQRTPLDKDHGTDPTWNQVMKFNLDEAALQQGRLVLEIAIYADATFGDKEIGHVSIPLNEFLKPAGGNKGATTSAQFVSYQVRKPSGKAKGIINLSVKLAEKPEVK-----PQAVAGSYGAGKAEPVTAYPAGSYGASNVEPVTAYPAYPPAGSSSQP

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
807	66			33	0.997452
1183		11		88	0.923564
1272	16		83		0.994512
1305	75		25		0.996473
1375		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain