SustainPineDB

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene934

Length: 2717 nt

UniGene Fasta

>uma_v2.0_unigene934
GCGGGCACAAGTTCAGCACGCATATGAAGTAAGGTCAGATTTAAGGTATTTTTCGTCCTAGGGTTTTAAATTTTTGGAGATCAGATCAGATGCATGGATCCGTTTGCAGAAGTCGAGCTTATGGTTATTCTTATAGATACTGCTATGATGGGGCATTTTATTTAACCTAAATCTCAATCATCGCTTCAATACGGGAGGGGGAAACTAAAATTTCCGTAAGGACCGAAGAGAAAAAAAGAAGAAGGGGAAAAAGAATTTGTGGGGTTTGAATGAAAAGAATTCATCCTTGAAAAGATGACGGAGAATGAGGTGCCATTATTTCTTCATCTGCGCAGAGAGCCATTCGAATATGGACTCCTACCCCTTCCCAACCTTATGTTCACGGACGGAACCTCCACATTGAAAGGCGTCAGAGAGAAACTTATCCAGAATTCTTTTACTTACACTGTAAATAATAATAATAATAGTAGCAATAATGATGATAATAATAATGATAATAATGGGGAGGTGTCCAGATCATTTAGCAGGCGCGTGAATACCACTGGCATCGCAGAGAGCTTACAGCTTTCCGAAGACCATGCTCGTGTTGTCATAGATACGCTGGCTTCTGTGCTGCCCGAACATGGGCAAGGAGGAGGAGCAGCGGATCCCCTCATTCATGCTTCGTATGTTGATGTGGACTCCATCGGCGCCGACGTATATGATTTGATACTGTTCCTGTTCATACAAACTTATAAGAAGCTTGTGCCCCGGACTCACAAGGATGCGGCGTCGGTTGCCGATGTTTGGCCTTCAACTTCTGCTTTCGATGGAATTTTTGCAACTCTTTCGCCACTCCAACTCATGAGATCTGGTCGACGATTTATGCCATCCCAAGCAGATGAGGAGGCTCACCAGCTATCGTATGTGCAGAAACATTTGCCAAATATATTGGGTTTATTAGCAGAGTCATCAGACAATGAAAGTGCAGATATGCAGGTTTTAAGCTCAGAGAGTTTTGAGCATCTTGGATTACTTTTTCATGTTAGGGAAAGAGGCACAGAAGACAGGTCTCTTAGCCAAGTAGCTCCTTTTTTCGCAAACTCAGATCCCGATATGCCTGCTGTTCCAGTACCTGTTCCACAGGTTCTTGATTGGATACTTGAACATATTTGTGCCGCATCAGATAATCCTCTCGAAAAAGTGCTTGGTGGAGAAAATGGGTCCTCCATTGTTGGTGATTTGGATATTACAAAGAATGATTCATGCGGTAGCAGTTCTGGATGTCAATCTGGTGCATTCCCAAATGGTTACAATCAGCAGCAGAAAGATGCTCATTTAAAGCTGACTTTTGTGGAGGGCGTTAATAAAGCATCAGTAATGAAGCAAGCTAGTGATATTGAAGGATCTTCAGTCAAGGTCTTGAACTGCCATGATTCAGTGATATACATATTAGCACCCTTGAATTATGCAACCGTCAATGGGTGTTCAGATGCTACTATCCTTCTTGGACCTGTTGGGAAGGCTGTAAGAATAGAGCATTGTGAACGTGTAAATGTGATCGTTGCAACGATGCATATTTGCATAGCAAATTGTCGTGAATGCATTTTCTACTTAGGTGTGAATAAGCATCCAATAATTTCCGGCAACAATCACAACTTACAGGTGGCGCCATATAATACATTTTATCCGGATCTAGAGATGCATTTGGCACAAGTCGGTGTAGATCCAACAGTCAATTTGTGGGACAAGCCTTTGGCACTAGGAATGGTAGACCCACATGATTCTCTATCTCATCCGGTGGGTGTTTCTGATGTACAAGCTGAGTCGGCTAATGTTCTTCATCCAGACCAGTTCTTGAACTTTGTGATTCCAAAATGGTTTGAAGTGGAATCCAAATTTCAACAAACAAAAGACAATCCGTTTATATTACCAAATCGATACATGGCAGCACAACAGCAAAAGTATAACTCACTCGAGGATACGAGAGGATCTTTGAGAAACACTCAACTGGATGATAGTAAAAAGCGTGAACTAGTGAGTGCAATCCATGGCCATTTCAAGGACTGGCTATATGCATCTGGTAATATACGTCAGCTCTATTGTCTACAAAGTTCTGAACTGGATTCAAGGGAGATTGACTGATTGGGGAATTCTGCCCAATGGACTGACCTTATGTCATAGGGTTGTAGAGGATGCTTTTGTAGAGCTTGTTGTATATGGACTTTATTTTACTTTCAGATTATTTCATCATGCCAGTCCTGGATTTACAGATTTACATCGATTTGGAGGTTCTCATTTGGCTTATGGCAGGCTATCCAAAAAGGTGCCCTTTTTGAACCAGATTGCAGGATTGCAACATCAAAGATTGATTTTCTTCATGGGATCCTGAGAGAATCTTGTATTAAGTCAGCCTGTAGTTGCGTCATATGTTTCTCACTAAATATTAATTCGAAGTGTATCATTGAATGAGCTCATTTGTCATGTGTACTTTAGGAAAATGGCTGTATTCTAGACACGTGAACATGTATTTTAAGGGTAAGCACCACCCTCATTTATTAAGACCTGAGGAAGATATTTGCGGATATTCAATTTTATTTTGATTGCATGTGCCTCTCTATTAATTATCATGAAGCATCTTGTATGACTTTCAGCAAGTCATGCTGTTGAATAAACAAAGTTACTGGTTACTTGACAAGTAAGGCCCCAATTGTCAATGCATTTATTAGATTTGATTG

Ace file of the UniGene uma_v2.0_unigene934

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11544	42/42

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin binding cofactor C domain-containing protein [Arabidopsis thaliana] gb\|AAK96632.1\| AT3g57890/T10K17_100 [Arabidopsis thaliana] gb\|AAL36073.1\| AT3g57890/T10K17_100 [Arabidopsis thaliana] gb\|AEE79713.1\| Tubulin binding cofactor C domain-containing p	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	tbcc domain-containing protein 1-like	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell morphogenesis	GO:0000902	Biological Process	0.0	71%
Blast2go	binding	GO:0005488	Molecular Function	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	C-CAP/cofactor C-like domain	IPR017901	-	-
Sma3	CARP motif	IPR006599	-	-
Sma3	Tubulin binding cofactor C	IPR012945	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKK2

Fln msg:

Fln protein: MTENEVPLFLHLRREPFEYGLLPLPNLMFTDGTSTLKGVREKLIQNSFTYTVNNNNNSSNNDDNNNDNNGEVSRSFSRRVNTTGIAESLQLSEDHARVVIDTLASVLPEHGQGGGAADPLIHASYVDVDSIGADVYDLILFLFIQTYKKLVPRTHKDAASVADVWPSTSAFDGIFATLSPLQLMRSGRRFMPSQADEEAHQLSYVQKHLPNILGLLAESSDNESADMQVLSSESFEHLGLLFHVRERGTEDRSLSQVAPFFANSDPDMPAVPVPVPQVLDWILEHICAASDNPLEKVLGGENGSSIVGDLDITKNDSCGSSSGCQSGAFPNGYNQQQKDAHLKLTFVEGVNKASVMKQASDIEGSSVKVLNCHDSVIYILAPLNYATVNGCSDATILLGPVGKAVRIEHCERVNVIVATMHICIANCRECIFYLGVNKHPIISGNNHNLQVAPYNTFYPDLEMHLAQVGVDPTVNLWDKPLALGMVDPHDSLSHPVGVSDVQAESANVLHPDQFLNFVIPKWFEVESKFQQTKDNPFILPNRYMAAQQQKYNSLEDTRGSLRNTQLDDSKKRELVSAIHGHFKDWLYASGNIRQLYCLQSSELDSREID*

Protein Length: 611

Fln nts: GCGGGCACAAGTTCAGCACGCATATGAAGTAAGGTCAGATTTAAGGTATTTTTCGTCCTAGGGTTTTAAATTTTTGGAGATCAGATCAGATGCATGGATCCGTTTGCAGAAGTCGAGCTTATGGTTATTCTTATAGATACTGCTATGATGGGGCATTTTATTTAACCTAAATCTCAATCATCGCTTCAATACGGGAGGGGGAAACTAAAATTTCCGTAAGGACCGAAGAGAAAAAAAGAAGAAGGGGAAAAAGAATTTGTGGGGTTTGAATGAAAAGAATTCATCCTTGAAAAG_-_ATGACGGAGAATGAGGTGCCATTATTTCTTCATCTGCGCAGAGAGCCATTCGAATATGGACTCCTACCCCTTCCCAACCTTATGTTCACGGACGGAACCTCCACATTGAAAGGCGTCAGAGAGAAACTTATCCAGAATTCTTTTACTTACACTGTAAATAATAATAATAATAGTAGCAATAATGATGATAATAATAATGATAATAATGGGGAGGTGTCCAGATCATTTAGCAGGCGCGTGAATACCACTGGCATCGCAGAGAGCTTACAGCTTTCCGAAGACCATGCTCGTGTTGTCATAGATACGCTGGCTTCTGTGCTGCCCGAACATGGGCAAGGAGGAGGAGCAGCGGATCCCCTCATTCATGCTTCGTATGTTGATGTGGACTCCATCGGCGCCGACGTATATGATTTGATACTGTTCCTGTTCATACAAACTTATAAGAAGCTTGTGCCCCGGACTCACAAGGATGCGGCGTCGGTTGCCGATGTTTGGCCTTCAACTTCTGCTTTCGATGGAATTTTTGCAACTCTTTCGCCACTCCAACTCATGAGATCTGGTCGACGATTTATGCCATCCCAAGCAGATGAGGAGGCTCACCAGCTATCGTATGTGCAGAAACATTTGCCAAATATATTGGGTTTATTAGCAGAGTCATCAGACAATGAAAGTGCAGATATGCAGGTTTTAAGCTCAGAGAGTTTTGAGCATCTTGGATTACTTTTTCATGTTAGGGAAAGAGGCACAGAAGACAGGTCTCTTAGCCAAGTAGCTCCTTTTTTCGCAAACTCAGATCCCGATATGCCTGCTGTTCCAGTACCTGTTCCACAGGTTCTTGATTGGATACTTGAACATATTTGTGCCGCATCAGATAATCCTCTCGAAAAAGTGCTTGGTGGAGAAAATGGGTCCTCCATTGTTGGTGATTTGGATATTACAAAGAATGATTCATGCGGTAGCAGTTCTGGATGTCAATCTGGTGCATTCCCAAATGGTTACAATCAGCAGCAGAAAGATGCTCATTTAAAGCTGACTTTTGTGGAGGGCGTTAATAAAGCATCAGTAATGAAGCAAGCTAGTGATATTGAAGGATCTTCAGTCAAGGTCTTGAACTGCCATGATTCAGTGATATACATATTAGCACCCTTGAATTATGCAACCGTCAATGGGTGTTCAGATGCTACTATCCTTCTTGGACCTGTTGGGAAGGCTGTAAGAATAGAGCATTGTGAACGTGTAAATGTGATCGTTGCAACGATGCATATTTGCATAGCAAATTGTCGTGAATGCATTTTCTACTTAGGTGTGAATAAGCATCCAATAATTTCCGGCAACAATCACAACTTACAGGTGGCGCCATATAATACATTTTATCCGGATCTAGAGATGCATTTGGCACAAGTCGGTGTAGATCCAACAGTCAATTTGTGGGACAAGCCTTTGGCACTAGGAATGGTAGACCCACATGATTCTCTATCTCATCCGGTGGGTGTTTCTGATGTACAAGCTGAGTCGGCTAATGTTCTTCATCCAGACCAGTTCTTGAACTTTGTGATTCCAAAATGGTTTGAAGTGGAATCCAAATTTCAACAAACAAAAGACAATCCGTTTATATTACCAAATCGATACATGGCAGCACAACAGCAAAAGTATAACTCACTCGAGGATACGAGAGGATCTTTGAGAAACACTCAACTGGATGATAGTAAAAAGCGTGAACTAGTGAGTGCAATCCATGGCCATTTCAAGGACTGGCTATATGCATCTGGTAATATACGTCAGCTCTATTGTCTACAAAGTTCTGAACTGGATTCAAGGGAGATTGACTGA___TTGGGGAATTCTGCCCAATGGACTGACCTTATGTCATAGGGTTGTAGAGGATGCTTTTGTAGAGCTTGTTGTATATGGACTTTATTTTACTTTCAGATTATTTCATCATGCCAGTCCTGGATTTACAGATTTACATCGATTTGGAGGTTCTCATTTGGCTTATGGCAGGCTATCCAAAAAGGTGCCCTTTTTGAACCAGATTGCAGGATTGCAACATCAAAGATTGATTTTCTTCATGGGATCCTGAGAGAATCTTGTATTAAGTCAGCCTGTAGTTGCGTCATATGTTTCTCACTAAATATTAATTCGAAGTGTATCATTGAATGAGCTCATTTGTCATGTGTACTTTAGGAAAATGGCTGTATTCTAGACACGTGAACATGTATTTTAAGGGTAAGCACCACCCTCATTTATTAAGACCTGAGGAAGATATTTGCGGATATTCAATTTTATTTTGATTGCATGTGCCTCTCTATTAATTATCATGAAGCATCTTGTATGACTTTCAGCAAGTCATGCTGTTGAATAAACAAAGTTACTGGTTACTTGACAAGTAAGGCCCCAATTGTCAATGCATTTATTAGATTTGATTG

Fln Alignment:

Contig934___MTENEVPLFLHLRREPFEYGLLPLPNLMFTDGTSTLKGVREKLIQNSFTYTVXXXXXXXXXXXXXXXXXGEVSRSFSRRVNTTGIAESLQLSEDHARVVIDTLASVLPEHGQGGGAADPLIHASYVDVDSIGADVYDLILFLFIQTYKKLVPRTHKDAASVADVWPSTSAFDGIFATLSPLQLMRSGRRFMPSQADEEAHQLSYVQKHLPNILGLLAESSDNESADMQVLSSESFEHLGLLFHVRERGTEDRSLSQVAPFFANSDPDMXXXXXXXXXXLDWILEHICAASDNPLEKVLGGENGSSIVGDLDITKNDXXXXXXXXXXXAFPNGYNQQQKDAHLKLTFVEGVNKASVMKQASDIEGSSVKVLNCHDSVIYILAPLNYATVNGCSDATILLGPVGKAVRIEHCERVNVIVATMHICIANCRECIFYLGVNKHPIISGNNHNLQVAPYNTFYPDLEMHLAQVGVDPTVNLWDKPLALGMVDPHDSLSHPVGVSDVQAESANVLHPDQFLNFVIPKWFEVESKFQQTKDNPFILPNRYMAAQQQKYNSLEDTRGSLRNTQLDDSKKRELVSAIHGHFKDWLYASGNIRQLYCLQSSELDSREID
B8LKK2______________MTENEVPLFLHLRREPFEYGLLPLPHLMFTDGTSTLKSVREKLLQNSFTYTVNNNNHNSNNDDNNNDNNGEVSRSFSRRVNATGIAESLQLSEDHARVVIDTLAAVLPEYGRGGGAADPLVHASYVDVDSIGADVYDLILFLLIQTYKKLVPRPHKDAASVADVWPSTSAFDGIFATLSPLQLMRSGRRFMPSQADEEAHQLHYVQKNLPNILGLLAEPSDNESADMQVLSSESFEHLGLLLHVRERGTEDRSLSQVAPFFANSDPDMPAVPVPVPQVLDWILEHICAAPDHPLERVLGGENGSSTVGDLDITKNDSYTSSSGSQSGAFPNGYNQQQKDAHLKLTFVEGVTKASVVKQPVDIEGSSVKVLNCHDSVIYILAPLNYATVNGCSDATILLGAVGKAVRVEHCERVNVIVPTMHICIANCRECNFYLGVNKQPIISGNNHILQVAPYNTFYPDLEMHLAQVGVDPTVNMWDKPLALGMVDPHDSLSHPAGVSDVQAESAAVLHPDQFLNFVIPKWFEVESKFQQTKDNPFILPNPYMAAQQQKYTSLEDMRASLRNTQLDDTKKRELASAIHGHFKDWLYASGNIRQLYCLQSNELDSREID

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
2167		14		85	0.993533
2168		14		85	0.993533
2169	14		85		0.993533
2170			14	85	0.993533
2171	85		14		0.993533
2178			85	14	0.993533
2445	12			87	0.992554
2478	83		16		0.994512
2547		20		80	0.995493
2569		20		80	0.995493
2676	75			25	0.996473
2677		75		25	0.996473
2678	66			33	0.997452
2680			66	33	0.997452
2682	66	33			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
451	466	AAT AAT AAT AAT AAT A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain