SustainPineDB

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene15

Length: 2441 nt

UniGene Fasta

>uma_v2.0_unigene15
TTTTTGATGTAATGTTTTTCTGATATTTATAGCAGGGGAGTGAATAGAAACGGGTTCAGGGACGAGGGTAGGGAAAGATTATGGTTGAAGAAATTGGGGGTTTGATAGATTTGGATTGAGTATATTTGGAATTCGGAGATCTCTGTCTGTGTGTCTGAGTTTGTCGGGTCTCTGTTGTTGCTTGTCTCGTTGATTGATTTAGCAAAAATGTCAAGCGTTTCTGCAGAACAACCAGCGTATTCCATGGGGCCGTTGCCCTGGTCGTTTTTCAGTGATCATTCTTCTGGTAGCCATGGCGACGATTCGGTTTGTTTCATGTCCCCTGGTCGCAGTGGCGGGTTGAATTTGAATGAGGTTCAGTATTCTTCTTCGTCGCCGACTTCTTCAGATTACCTGAATTCTCCGCCTTCAAGATTCGCAGCAAGTCGCGGGTTCGAAGACGACAGAAGTGCTCTGAGCTTTCCGGATTTTCCAGACATGAGCTGTGGCTATGAGAGCAATGGAGATGCCGCGGCTTTTGTGCAGAAAGATGCACGAGGCGAGATGCCAGGCATTCGTTTTAATAACGCATTTGTGGGCTCTAGTTCGCCTCGGCTGGAGGATGTGTTTTGTGCCCTGCAGAAGTATTTGCCTTCTAATAATGAAGATGAAGAGTCTTTGCCTGCTGTGGATGCTTATTCCTGCGACGAATTCAGAATGTATGAATTTAAGGTCCGGCGCTGTATGAGAGGACGGAGCCATGACTGGACTGAGTGCCCCTTCGCTCACCCAGGGGAGAAGGCAAGAAGACGCGATCCTCGACGCTTTCATTATTCTGGAACTGCTTGCCCGGACTTCAGAAAAGGAACCTGCCGCCGCGGGGATGCTTGCGAGTTTGCCCACGGCGTTTTCGAGTGCTGGCTTCATCCTGCTCGATATCGGACCCAGCCTTGTAAAGATGGACGGAGCTGTAAGCGCAGAGTCTGTTTCTTTGCTCATACTCCGCAGCAACTCCGCCTGTTGCCAGGGCTTTCATCTCCCAGCAGCAATTCAAGAAGCAGTACGGCGCTGCATGTTGCTTCTGCTCTGAAGAACTATTCTCTGTCGGCCTCAGCAGCAGCTTATGACGGATCACCGCTTCGGCAGGCGCTTGAAGGAATCGTGAGTTCGAGTTCCCCCGGCGGATCTTTGATATCTTCCCCGACTTCGACGTTGGTGGGTTCCCAGTCACCTCCGCCTCTGTCTCCACCACTGTCACCATCTGCGTCTCCCCCTCTGTCGCCTGAGCCTGGATGGTCTAATACTTACAGAGTCGGTTTTCAAAAGGCTGTTCTTAACAGACAAATCCCTGGACACCGTCGTCATGTAGAGAGAATTGCCTCAATGCCTTCTGAAGCCTCAAGAGGGTTGGCAAGCCCAAGGCTTATGAATTTATCTGATAGTACTTCCCAACAGCAGCCAATGGTGGAACTTATTAATTCACTCCAGAGTTTGAGGATGAAGGAATCCTCTGTACCTTCATGGCTGCAAGTTCAACCCCAAATGGTCAATGGTGGCGGTGGGCATGGATCTCCGAGGGTTTCGAACCTGCGACATTGTGTCGTTCAAAGCCTCCCCTGCACACCAACTCACTCGGAAACCGCCGATGATGTGGGTGATTGGTTTGAAGAGCCTGTTCAGAGGGTCGAATCTGGTAAAGACTTGAGGGCAAAGATATACGCAAGGCTTACAAGAGAAAATCTCAATCAGGACTCTTCTTTATCAGCAGAGTCGCCAGATGTCGGTTGGGTGAACGAGCTTGTCAAGTAATGGATTCAGGGTTTTAGGTTTTTTCTTCATTCGCAGGTATTGATCCTTTTGATGAATTCGTAATTTTATTTTGATTGTTTTTTATATTTGTAGAAGTTGGGGACTTCAGTGGTTTTTACTCGGAGCCATGAGAATAGTGTTGCATGGCCGAGTTCGCCATGGGGAAAAGAATTACTAAACCTGGGGAATGTACAGATGAAGATGGGTTGACCTAATCATAAATTTACAAGTTGATGTCTGCTTAGCTGCAGTGCAAAGTGACTTGAGTTTTTACAAGGGCAATGATGTCGGACCTCTCTATTTTGCCCTGGCCAACAAGTTGCACATATATTTTGGCAGATGGTATGTCGCTGACTGGGCAGAGCCTGCCTTCTGTTAATTTTTTGGGGATGTAGCTTAACATCCTATGATGCTGTGGTATATAACAATATTAATAATCGATCGATCGTCATATTAGCCATAGTAGTGAATACTTCCATTGTATGGGTGGATTAAGAACGCATCCATCCATTTTGGTACATTATTTTGTTACATAGAATAGTTTTCTGTACAGGAAGCATAGCACATAGGGCAGTCGAGTCAGGTGAGGTGACTGCTTGTTACAGACCAGCAGTGCCTGCCATTGTGTAAAAAACAAATTAATCAATTTTACC

Ace file of the UniGene uma_v2.0_unigene15

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1574	43/49
SustainPine v2.0	sp_v2.0_unigene78840	5/49

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectinesterase.	EC:3.1.1.11	-	0.0	79%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	79%
Blast2go	Starch and sucrose metabolism	00500	79%
Blast2go	Metabolic pathways	01100	79%

Source	GOs	Term	Type	Identity
Blast2go	leaf senescence	GO:0010150	Biological Process	79%
Blast2go	cell wall modification	GO:0042545	Biological Process	79%
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	79%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	79%
Blast2go	pectinesterase activity	GO:0030599	Molecular Function	79%
Blast2go	aspartyl esterase activity	GO:0045330	Molecular Function	79%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	79%
Blast2go	cell wall	GO:0005618	Cellular Component	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMK4

Fln msg: your sequence is shorter than subject: 527 - 581

Fln protein: MSSVSAEQPAYSMGPLPWSFFSDHSSGSHGDDSVCFMSPGRSGGLNLNEVQYSSSSPTSSDYLNSPPSRFAASRGFEDDRSALSFPDFPDMSCGYESNGDAAAFVQKDARGEMPGIRFNNAFVGSSSPRLEDVFCALQKYLPSNNEDEESLPAVDAYSCDEFRMYEFKVRRCMRGRSHDWTECPFAHPGEKARRRDPRRFHYSGTACPDFRKGTCRRGDACEFAHGVFECWLHPARYRTQPCKDGRSCKRRVCFFAHTPQQLRLLPGLSSPSSNSRSSTALHVASALKNYSLSASAAAYDGSPLRQALEGIVSSSSPGGSLISSPTSTLVGSQSPPPLSPPLSPSASPPLSPEPGWSNTYRVGFQKAVLNRQIPGHRRHVERIASMPSEASRGLASPRLMNLSDSTSQQQPMVELINSLQSLRMKESSVPSWLQVQPQMVNGGGGHGSPRVSNLRHCVVQSLPCTPTHSETADDVGDWFEEPVQRVESGKDLRAKIYARLTRENLNQDSSLSAESPDVGWVNELVK*

Protein Length: 528

Fln nts: TTTTTGATGTAATGTTTTTCTGATATTTATAGCAGGGGAGTGAATAGAAACGGGTTCAGGGACGAGGGTAGGGAAAGATTATGGTTGAAGAAATTGGGGGTTTGATAGATTTGGATTGAGTATATTTGGAATTCGGAGATCTCTGTCTGTGTGTCTGAGTTTGTCGGGTCTCTGTTGTTGCTTGTCTCGTTGATTGATTTAGCAAAA_-_ATGTCAAGCGTTTCTGCAGAACAACCAGCGTATTCCATGGGGCCGTTGCCCTGGTCGTTTTTCAGTGATCATTCTTCTGGTAGCCATGGCGACGATTCGGTTTGTTTCATGTCCCCTGGTCGCAGTGGCGGGTTGAATTTGAATGAGGTTCAGTATTCTTCTTCGTCGCCGACTTCTTCAGATTACCTGAATTCTCCGCCTTCAAGATTCGCAGCAAGTCGCGGGTTCGAAGACGACAGAAGTGCTCTGAGCTTTCCGGATTTTCCAGACATGAGCTGTGGCTATGAGAGCAATGGAGATGCCGCGGCTTTTGTGCAGAAAGATGCACGAGGCGAGATGCCAGGCATTCGTTTTAATAACGCATTTGTGGGCTCTAGTTCGCCTCGGCTGGAGGATGTGTTTTGTGCCCTGCAGAAGTATTTGCCTTCTAATAATGAAGATGAAGAGTCTTTGCCTGCTGTGGATGCTTATTCCTGCGACGAATTCAGAATGTATGAATTTAAGGTCCGGCGCTGTATGAGAGGACGGAGCCATGACTGGACTGAGTGCCCCTTCGCTCACCCAGGGGAGAAGGCAAGAAGACGCGATCCTCGACGCTTTCATTATTCTGGAACTGCTTGCCCGGACTTCAGAAAAGGAACCTGCCGCCGCGGGGATGCTTGCGAGTTTGCCCACGGCGTTTTCGAGTGCTGGCTTCATCCTGCTCGATATCGGACCCAGCCTTGTAAAGATGGACGGAGCTGTAAGCGCAGAGTCTGTTTCTTTGCTCATACTCCGCAGCAACTCCGCCTGTTGCCAGGGCTTTCATCTCCCAGCAGCAATTCAAGAAGCAGTACGGCGCTGCATGTTGCTTCTGCTCTGAAGAACTATTCTCTGTCGGCCTCAGCAGCAGCTTATGACGGATCACCGCTTCGGCAGGCGCTTGAAGGAATCGTGAGTTCGAGTTCCCCCGGCGGATCTTTGATATCTTCCCCGACTTCGACGTTGGTGGGTTCCCAGTCACCTCCGCCTCTGTCTCCACCACTGTCACCATCTGCGTCTCCCCCTCTGTCGCCTGAGCCTGGATGGTCTAATACTTACAGAGTCGGTTTTCAAAAGGCTGTTCTTAACAGACAAATCCCTGGACACCGTCGTCATGTAGAGAGAATTGCCTCAATGCCTTCTGAAGCCTCAAGAGGGTTGGCAAGCCCAAGGCTTATGAATTTATCTGATAGTACTTCCCAACAGCAGCCAATGGTGGAACTTATTAATTCACTCCAGAGTTTGAGGATGAAGGAATCCTCTGTACCTTCATGGCTGCAAGTTCAACCCCAAATGGTCAATGGTGGCGGTGGGCATGGATCTCCGAGGGTTTCGAACCTGCGACATTGTGTCGTTCAAAGCCTCCCCTGCACACCAACTCACTCGGAAACCGCCGATGATGTGGGTGATTGGTTTGAAGAGCCTGTTCAGAGGGTCGAATCTGGTAAAGACTTGAGGGCAAAGATATACGCAAGGCTTACAAGAGAAAATCTCAATCAGGACTCTTCTTTATCAGCAGAGTCGCCAGATGTCGGTTGGGTGAACGAGCTTGTCAAGTAA___TGGATTCAGGGTTTTAGGTTTTTTCTTCATTCGCAGGTATTGATCCTTTTGATGAATTCGTAATTTTATTTTGATTGTTTTTaATATTTGTAGAAGTTGGGGACTTCAGTGGTTTTTACTCGGAGCCATGAGAATAGTGTTGCATGGCCGAGTTCGCCATGGGGAAAAGAATTACTAAACCTGGGGAATGTACAGATGAAGATGGGTTGACCTAATCATAAATTTACAAGTTGATGTCTGCTTAGCTGCAGTGCAAAGTGACTTGAGTTTTTACAAGGGCAATGATGTCGGACCTCTCTATTTTGCCCTGGCCAACAAGTTGCACATATATTTTGGCAGATGGTATGTCGCTGACTGGGCAGAGCCTGCCTTCTGTTAATTTTTTGGGGATGTAGCTTAACATCCTATGATGCTGTGGTATATAACAATATTAATAATCGATCGATCGTCATATTAGCCATAGTAGTGAATACTTCCATTGTATGGGTGGATTAAGAACGCATCCATCCATTTTGGTACATTATTTTGTTACATAGAATAGTTTTCTGTACAGGAAGCATAGCACATAGGGCAGTCGAGTCAGGTGAGGTGACTGCTTGTTACAGACCAGCAGTGCCTGCCATTGTGTAAAAAACAAATTAATCAATTTTACC

Fln Alignment:

Contig15___ALQKYLPSNNEDEESLPAVDAYSCDEFRMYEFKVRRCMRGRSHDWTECPFAHPGEKARRRDPRRFHYSGTACPDFRKGTCRRGDACEFAHGVFECWLHPARYRTQPCKDGRSCKRRVCFFAHTPQQ
B8LMK4_____________ALHKYLPSNNEDEASWPAVDAYSCDEFRMYEFKVRRCMRGRSHDWTECPFAHPGEKARRRDPRRFHYSGTACPDFRKGSCRRGDACEFAHGVFECWLHPARYRTQPCKDGRNCRRRVCFFAHTPEQ

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1744		28		71	1.0
1804		16	83		0.994512
1841		16		83	0.994512
1876	50	50			1.0
2250		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain