SustainPineDB

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene2

Length: 1661 nt

UniGene Fasta

Ace file of the UniGene uma_v2.0_unigene2

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene229	36/36

Source	Descriptions	Term	Type	Identity
AutoFact	pfam03321, GH3, GH3 auxin-responsive promoter	-	-	38%
FL-Next	tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine).	-	-	41%
Blast2go	probable indole-3-acetic acid-amido synthetase -like	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	0.0	75%
Blast2go	response to light stimulus	GO:0009416	Biological Process	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	GH3 auxin-responsive promoter	IPR004993	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q4LAM0

Fln msg: your sequence is shorter than subject: 440 - 615

Fln protein: GSNQSYTKGGLLASTATSNIYHSESFKLYKKNIQILGCSPDEVIFGSDCRQSMYCHLLCGLLYSNEVQYMSSTFSYGIVEAFRTFEQVWQQLCGDIREGRLNEKITVTPMRAAVSKLLKPDPDLADAIYEKCKNIGNWHGVIPKIWPNAKYIISIMTGAMEPYLRKLRHYAGNLPLLASEYGATEGWIGANIDPTSSPENTIFTVVPNIGYFEFIPLHLRLGDWKLGETVATADYIESEPVSLTEVKIGQQYEVVLTTFAGLYRYRLGDVVKVTSFYNSSPQLQFICRRNLLLTVNIDKTTEKDLQISVDKATELLKEENVDLVDFTSYADLSTEPGHYVIFWELSDRLNEEILKRCCSTMDETFIDPGYLGSRKAKTIGPLEIRIVEKGTFRKIIDHYMSRGGAVNQFKIPRCISTSQDLFDILNKNVIQTCFSTLFS*

Protein Length: 441

Fln nts: TGGTAGCAACCAATCCTACACCAAGGGGGGCTTACTAGCTTCTACAGCAACCTCAAATATATATCATAGTGAATCTTTTAAATTATATAAGAAGAACATCCAGATCTTGGGATGCAGCCCAGATGAGGTTATATTTGGGTCTGATTGTCGGCAATCCATGTACTGCCATCTTTTATGTGGGCTTCTCTATTCAAATGAGGTACAATATATGTCATCAACTTTTTCATACGGTATTGTAGAAGCTTTTCGGACCTTTGAGCAAGTCTGGCAACAGCTTTGTGGTGATATTAGGGAAGGAAGACTCAATGAGAAAATCACAGTGACCCCTATGAGGGCAGCCGTTTCCAAGCTGCTTAAGCCTGATCCAGATTTGGCAGATGCAATATACGAGAAGTGTAAGAATATTGGGAATTGGCATGGAGTTATCCCAAAAATTTGGCCCAATGCTAAGTACATCATTTCTATCATGACAGGGGCCATGGAGCCTTATCTGAGGAAACTGAGACATTATGCAGGCAATTTGCCATTGTTGGCTTCAGAGTATGGGGCTACTGAAGGTTGGATTGGTGCCAATATAGATCCCACATCCTCACCAGAAAATACAATTTTTACAGTGGTTCCCAATATTGGATATTTTGAATTTATTCCTCTTCATCTGCGTCTGGGAGACTGGAAATTAGGTGAAACTGTAGCTACTGCTGATTATATAGAATCAGAACCTGTGAGTTTGACAGAAGTGAAGATTGGGCAGCAATATGAGGTGGTTTTGACAACATTTGCTGGGCTCTATAGGTACAGGCTTGGTGATGTCGTGAAAGTTACCAGCTTTTACAATTCTAGTCCGCAGCTGCAATTCATTTGCCGAAGGAACCTCCTCCTTACAGTCAATATTGACAAGACAACCGAGAAAGATCTACAAATATCTGTTGATAAGGCCACAGAGCTCTTAAAGGAAGAAAATGTGGATTTGGTTGATTTCACAAGCTATGCTGATCTATCAACTGAGCCAGGTCACTATGTAATATTTTGGGAGCTTAGTGACAGATTAAATGAGGAGATTCTTAAGAGATGTTGCTCAACAATGGACGAGACTTTTATTGATCCAGGTTATCTTGGTTCCAGAAAAGCAAAAACTATTGGGCCTCTCGAAATTCGTATTGTCGAGAAAGGTACATTCCGGAAAATTATAGATCACTACATGAGTCGTGGAGGAGCAGTGAACCAGTTCAAAATCCCCAGATGCATCTCCACTAGCCAGGATCTGTTTGACATCCTCAACAAAAATGTAATTCAAACTTGTTTCAGCACACTTTTCTCATGA___TTTAGGTGATCATATGGCATGAACAACGTGCAGAAGTTTTGTGACTAGTTTTGTCAGTGTGAGAATAGTTGTGTGTTGAAGAAAACTTCAGACTGTTGAATGTGCTTGCAATAATTCTGCTCAATCCCAAGCGGCACATATATGTATTTGAGTTAAAAAATCTTATTGTTTAGTTCTATGCGCTGGATTTTGAACTATGTCCCATGCTCTGTATTCAAGTATGGAAAGGGGCAAAGCAAATGTTAAGTTGCGGTCCATGACATTGTGAAGCAATGAAGCTAACTTTTTTAGTTGTATTTTGCATTTGAGTCACAAGATAATGTTGGGAATTCGAAATCAG

Fln Alignment:

Contig2___NQSYTKGGLLASTATSNIYHSESFKLYKKNIQILGCSPDEVIFGSDCRQSMYCHLLCGLLYSNEVQYMSSTFSYGIVEAFRTFEQVWQQLCGDIREGRLN-EKITVTPMRAAVSKLLKPDPDLADAIYEKCKNIGNWHGVIPKIWPNAKYIISIMTGAMEPYLRKLRHYAGNLPLLASEYGATEGWIGANIDPTSSPENTIFTVVPNIGYFEFIPLHLRLGDWKLGETVATADYIESEPVSLTEVKIGQQYEVVLTTFAGLYRYRLGDVVKVTSFYNSSPQLQFICRRNLLLTVNIDKTTEKDLQISVDKATELLKEENVDLVDFTSYADLSTEPGHYVIFWELSDR---LNEEILKRCCSTMDETFIDPGYLGSRKA-KTIGPLEIRIVEKGTFRKIIDHYMSRGGAVNQFKIPRCISTSQDLFDILNKNVIQTCFS
Q4LAM0____________SETRTPGGLLARPVLTSYYKSQDFIERPYDPYNVYTSPMEAILCSDSYQSMYCQLLCGLAQNHEVLRVGAVFASGLLRAIRFLEEHWQSLCQDIRSGTVNDEEVTDPCLRESVMKILHPNTQLADLIRTECSK-ESWQGIITRLWPNARYLDVIVTGAMAQYIKTLDFYSGGLPQVCTMYASSECYFGINLKPLCQPWEVSYTLMPNMAFFEFLPVYRNKNEDAGPVTTATEQ--PAELVDLVDVKVGQEYELVITTYSGLYRYRVGDVLRVTGFHNAAPQFQFVCRKNVMLSIDADKTDEAELHNAVMNAVKHLEPLEATLVEYTSYTDTSTIPGHYVLYWELRTSALPVPPSVFEDCCLTVEES-LNSVYRQCRVADKSIGPLEIKVVEMGTFDKLMDYAISRGSSINQYKAARCVKFA-PMVDILNSRVSASYFS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
434	80			20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain