SustainPineDB

Assembly Name: uma v2.0

UniGene Name: uma_v2.0_unigene590

Length: 2217 nt

UniGene Fasta

>uma_v2.0_unigene590
TTGTTAGGGTATTGTTGTTATGAAATTGGAACCCTTGGAGGTTCAGCCATCGACGGCTGAATCGAGAAATATTAACAGAATCGGAGGAAGTGTAGGAGGAGTGCTCATGGAGTCGGAGTCACAGTACAGCGGGAGCGCCGGCGCTCCACCGAATTTCGCCTTCGCGTTCAACGACAGCAATTTTTCGGATCGCATTCTGAGGATCGAAATCATGGCCAGCCCGACGGAAAGCAAGTCGGATGGTGAGGGTTGCAACAGTATCGCGGACTGGGCCAGGAACAGGAAGCGCAGACGAGAAGATATCAAGAAAGAAGCCGGGTTTCTGGATGGTTGTGAGGAGCACATAATGATCAGTGGTCATCCAGACACTGATGATGCAGCACCTTATGAAATTCCCGATGAAGAAGCAGTAGCAATGATTGAAGAATCCCCTACAACTGTAGCAATGCTCTCAAGTCCTGGTGCTGATGACTGTGGTCATGGTGCTTCTTCTTGGAGCATGGATTGCTCTACTATAGTGAAAGTCAGAACAATACATATAAGCTCTGCTATTTTGGCGGCAAAAAGTCCTTTCTTTTACAAACTTTTTTCAAATGGCATGCGGGAGTCCGAACAACGAGATGTCACTCTACGTATAAGTGCCTCAGAAGAAGCGGCTCTAATGGAGCTACTGAACTTCATGTACAGTGGAACAGTAACAACAAATACTGCTTCTGCATTGCTCGATGTATTAATGGCTGCAGATAAATTTGAGGTGGCTTCTTGTATGCGTCATTGCAGCAGGTTGTTAAGGAATTTGTCTATGACACCAGAATCTGCATTACTGTATCTGGAACTTCCATCTAGTGTTCTCATGGCAGATGCAGTTCAACCGCTAACTGATGCAGCTAAGCAATATCTTGCCAAGCAGTTTAGAGATATTACAAAGTTCCAAGAAGAAGTTATGGCTCTGCCATTGGCAGGTGTGGAGGCAGTGTTATCCAGTGATGAATTGCAAGTGGCTTCAGAAGATGCAGTCTATGATTTTGTGCTAAAATGGGCAAGGGCACATTATCCCAAGGTTGAAGACAGACGGGATATTTTGGGAAGTCGACTTGGCCGCTTAATTCGTTTCCCGAACATGTCAAGCCGGAAGCTTAAGAAAGTACTCTCTTGTAGTGATTTTGATCATGAACTTGCTTCAAAAGTCGTATTGGATGCACTTTTCTTCAAAGCAGAGACACCCCACAGACAGAGGTCTTTGGCTGCTGAAGAAACTTCACACAAAAGGTTTAGCGAAAGAGCTTACAAGTATAGACCGGTTAAAATGGTTGAATTTACTATGCCGCATCAGCAGTGCATAGTTTTTCTAGATCTCAAGAGAGCAGAGTGTGCAGGATTATTTCCTTCTGGACGTGTCTATTCTCAGGCATTCCATCTTGGGGGACAAGGATTCTTTTTGTCTGCACACTGTAATATGGACCAGCATAGTGCTTTTCATTGTTTCGGACTGTTTCTTGGCATGCAAGAGAAAGGCTCTGTAAGCTTTGCCGTTGAATATGAATTTGCTACTCGATCGAAGCCATCATCTGAGTTTGCTGTTAAATACAAAGGAAACTATACATTTACTGGTGGAAAGGCAGTTGGTTATCGCAATCTGTTTCAAACACCCTGGTCATCCTTTATGGCTGATGATAGTCCATACTTTATTAAGGATACTCTCCACCTGAGGGCAGAGCTTACTATCAAGCCACAGTGACACATCATGATCACGTTTGCTTTTAAAGTCATTGCCATATATATGTAGTTTGGCAAAATATCACAATTGCTGGAACAATTGAGATGGGGAATTATTTCATACTGATAAACTCATAATCCACGAGATTGTAAATTTCATTCCTGTGTTATGATGTTGGAGGAAAGAACCTGAAATTGTTGAGAACACGCACATATTATAGAGTTTCGCTGGACTGTGGTGATAACAGATTTTTGTTATGTTTGTCACTGCTAGCCATTTTTCCAAAGAACTAGCTGTAGATTTTAGGTAATCTGCATCCAACAGATGGACTTGTCTTTTGGCAAACAATTAGTCGTATAGTTAGGGAGTTTTAATCCAACAGATGGACTGTTTTTGGAAAACTCAATAATGTCTGTTTCTATAATCTTGTATCCTATGATGATTTTTTTGATGGATCTATTACTGGTTACATGGTCCATTTTTTGATGTTTTACTTATCT

Ace file of the UniGene uma_v2.0_unigene590

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4054	92/93

Source	Descriptions	Term	Type	Identity
AutoFact	Atpob1, putative n=1 Tax=Ricinus communis RepID=B9RE12_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	btb poz domain-containing protein pob1-like	-	-	84%

Source	InterPros	Term	Type	Identity
Sma3	BTB/Kelch-associated	IPR011705	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUY5

Fln msg:

Fln protein: MKLEPLEVQPSTAESRNINRIGGSVGGVLMESESQYSGSAGAPPNFAFAFNDSNFSDRILRIEIMASPTESKSDGEGCNSIADWARNRKRRREDIKKEAGFLDGCEEHIMISGHPDTDDAAPYEIPDEEAVAMIEESPTTVAMLSSPGADDCGHGASSWSMDCSTIVKVRTIHISSAILAAKSPFFYKLFSNGMRESEQRDVTLRISASEEAALMELLNFMYSGTVTTNTASALLDVLMAADKFEVASCMRHCSRLLRNLSMTPESALLYLELPSSVLMADAVQPLTDAAKQYLAKQFRDITKFQEEVMALPLAGVEAVLSSDELQVASEDAVYDFVLKWARAHYPKVEDRRDILGSRLGRLIRFPNMSSRKLKKVLSCSDFDHELASKVVLDALFFKAETPHRQRSLAAEETSHKRFSERAYKYRPVKMVEFTMPHQQCIVFLDLKRAECAGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQHSAFHCFGLFLGMQEKGSVSFAVEYEFATRSKPSSEFAVKYKGNYTFTGGKAVGYRNLFQTPWSSFMADDSPYFIKDTLHLRAELTIKPQ*

Protein Length: 574

Fln nts: TTGTTAGGGTATTGTTGTT_-_ATGAAATTGGAACCCTTGGAGGTTCAGCCATCGACGGCTGAATCGAGAAATATTAACAGAATCGGAGGAAGTGTAGGAGGAGTGCTCATGGAGTCGGAGTCACAGTACAGCGGGAGCGCCGGCGCTCCACCGAATTTCGCCTTCGCGTTCAACGACAGCAATTTTTCGGATCGCATTCTGAGGATCGAAATCATGGCCAGCCCGACGGAAAGCAAGTCGGATGGTGAGGGTTGCAACAGTATCGCGGACTGGGCCAGGAACAGGAAGCGCAGACGAGAAGATATCAAGAAAGAAGCCGGGTTTCTGGATGGTTGTGAGGAGCACATAATGATCAGTGGTCATCCAGACACTGATGATGCAGCACCTTATGAAATTCCCGATGAAGAAGCAGTAGCAATGATTGAAGAATCCCCTACAACTGTAGCAATGCTCTCAAGTCCTGGTGCTGATGACTGTGGTCATGGTGCTTCTTCTTGGAGCATGGATTGCTCTACTATAGTGAAAGTCAGAACAATACATATAAGCTCTGCTATTTTGGCGGCAAAAAGTCCTTTCTTTTACAAACTTTTTTCAAATGGCATGCGGGAGTCCGAACAACGAGATGTCACTCTACGTATAAGTGCCTCAGAAGAAGCGGCTCTAATGGAGCTACTGAACTTCATGTACAGTGGAACAGTAACAACAAATACTGCTTCTGCATTGCTCGATGTATTAATGGCTGCAGATAAATTTGAGGTGGCTTCTTGTATGCGTCATTGCAGCAGGTTGTTAAGGAATTTGTCTATGACACCAGAATCTGCATTACTGTATCTGGAACTTCCATCTAGTGTTCTCATGGCAGATGCAGTTCAACCGCTAACTGATGCAGCTAAGCAATATCTTGCCAAGCAGTTTAGAGATATTACAAAGTTCCAAGAAGAAGTTATGGCTCTGCCATTGGCAGGTGTGGAGGCAGTGTTATCCAGTGATGAATTGCAAGTGGCTTCAGAAGATGCAGTCTATGATTTTGTGCTAAAATGGGCAAGGGCACATTATCCCAAGGTTGAAGACAGACGGGATATTTTGGGAAGTCGACTTGGCCGCTTAATTCGTTTCCCGAACATGTCAAGCCGGAAGCTTAAGAAAGTACTCTCTTGTAGTGATTTTGATCATGAACTTGCTTCAAAAGTCGTATTGGATGCACTTTTCTTCAAAGCAGAGACACCCCACAGACAGAGGTCTTTGGCTGCTGAAGAAACTTCACACAAAAGGTTTAGCGAAAGAGCTTACAAGTATAGACCGGTTAAAATGGTTGAATTTACTATGCCGCATCAGCAGTGCATAGTTTTTCTAGATCTCAAGAGAGCAGAGTGTGCAGGATTATTTCCTTCTGGACGTGTCTATTCTCAGGCATTCCATCTTGGGGGACAAGGATTCTTTTTGTCTGCACACTGTAATATGGACCAGCATAGTGCTTTTCATTGTTTCGGACTGTTTCTTGGCATGCAAGAGAAAGGCTCTGTAAGCTTTGCCGTTGAATATGAATTTGCTACTCGATCGAAGCCATCATCTGAGTTTGCTGTTAAATACAAAGGAAACTATACATTTACTGGTGGAAAGGCAGTTGGTTATCGCAATCTGTTTCAAACACCCTGGTCATCCTTTATGGCTGATGATAGTCCATACTTTATTAAGGATACTCTCCACCTGAGGGCAGAGCTTACTATCAAGCCACAGTGA___CACATCATGATCACGTTTGCTTTTAAAGTCATTGCCATATATATGTAGTTTGGCAAAATATCACAATTGCTGGAACAATTGAGATGGGGAATTATTTCATACTGATAAACTCATAATCCACGAGATTGTAAATTTCATTCCTGTGTTATGATGTTGGAGGAAAGAACCTGAAATTGTTGAGAACACGCACATATTATAGAGTTTCGCTGGACTGTGGTGATAACAGATTTTTGTTATGTTTGTCACTGCTAGCCATTTTTCCAAAGAACTAGCTGTAGATTTTAGGTAATCTGCATCCAACAGATGGACTTGTCTTTTGGCAAACAATTAGTCGTATAGTTAGGGAGTTTTAATCCAACAGATGGACTGTTTTTGGAAAACTCAATAATGTCTGTTTCTATAATCTTGTATCCTATGATGATTTTTTTGATGGATCTATTACTGGTTACATGGTCCATTTTTTGATGTTTTACTTATCT

Fln Alignment:

Contig590___MKLEPLEVQPSTAESRNINRIGGSVGGVLMESESQYSXXXXXXXXXXXXXXXXXXXXRILRIEIMASPTESKSDGEGCNSIADWARNRKRRREDIKKEAGFLDGCEEHIMISGHPDTDDAAPYEIPDEEAVAMIEESPTTVAMLSSPGADDCGHGASSWSMDCSTIVKVRTIHISSAILAAKSPFFYKLFSNGMRESEQRDVTLRISASEEAALMELLNFMYSGTVTTNTASALLDVLMAADKFEVASCMRHCSRLLRNLSMTPESALLYLELPSSVLMADAVQPLTDAAKQYLAKQFRDITKFQEEVMALPLAGVEAVLSSDELQVASEDAVYDFVLKWARAHYPKVEDRRDILGSRLGRLIRFPNMSSRKLKKVLSCSDFDHELASKVVLDALFFKAETPHRQRSLAAEETSHKRFSERAYKYRPVKMVEFTMPHQQCIVFLDLKRAECAGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQHSAFHCFGLFLGMQEKGSVSFAVEYEFATRSKPSSEFAVKYKGNYTFTGGKAVGYRNLFQTPWSSFMADDSPYFIKDTLHLRAELTIKPQ
A9NUY5______________MKLEPSEVQPLTAESRNTNRIGGSGGGAFMESDSPYSASASAPPNFAFAFNDSNFSDRILRIEIMSGPTESKSDGEGCNSIADWARNRKRRREDIKKEAGFLDGCEEHIMISSHPDTDDAAAYENPDEEAVAMIEESPTTVAMLSSPAADDCGHGSSSWSMDCSTIVKVRTIHISSAILAAKSPFFYKLFSNGMRESEQRDVTLRISASEEAALMELLNFMYSATVTTNTASALLDVLMAADKFEVASCMRHCSRLLRNLPMTPESALLYLELPSSVLMADAVQPLTDAAKQYLAKQFKDITKFQDDVMALPLAGVEAVLSSDELQVASEDAVYDFVLKWARAHYPKMEERREILGSRLGRLIRFPNMSSRKLKKVLTCNDFDHELASKVVLDALFFKAETPHRQRSLAAEETSHKRFSERAYKYRPVKVVEFNMPHQQCIVFLDLKRGECAGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQHSAFHCFGLFLGMQEKGSVSFAVEYEFATRSKPLCDFAVKYKGNYTFTGGKAVGYRNLFQTPWSSFMAEDSPYFIRDTLHLRAELTIKPQ

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
762	25	75			0.996473
763	25			75	0.996473
764		25		75	0.996473
948		80		20	0.995493
1252	90		10		0.90298
1673	11		88		0.923564
1796	25		75		0.996473
2059		90		10	0.90298
2122	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain