SustainPineDB

Assembly Name: biogeco1 v2.0

UniGene Name: biog1_v2.0_unigene165

Length: 1869 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog1_v2.0_unigene165 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4530	4/37
SustainPine v2.0	sp_v2.0_unigene16920	26/37
SustainPine v2.0	sp_v2.0_unigene61410	7/37

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] ref\|NP_001030881.1\| uncharacterized protein [Arabidopsis thaliana] emb\|CAB67621.1\| putative protein [Arabidopsis thaliana] gb\|AAO42243.1\| unknown protein [Arabidopsis thaliana] gb\|AAO64125.1\| unknown protein	-	-	9.0e-12	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	uncharacterized protein	-	-	0.0	64%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ71

Fln msg: W1: There is no M at the beginning,

Fln protein: ALWWLSRSVFSSPSLFSQIRKWVVIWAAAEAKGKKLTAVSSHEDPGSGGEEFIPAYRRRGRPQKGAKDELEDEEVEKIEEEEDIKPVNVNKDSKVQVGTENGKKRKRHAQITESLDFAADKNGIPGRSAIDEPTKPNALIRNGSRRKSKPRRAAEAGVEF*

Protein Length: 162

Fln nts: ATGGGGGATCCGGATCCATTCAGCGCTCCATATGATTCGATGCCATGGACGTCTGATACATTTTTCCAATCAAAATTAAATTCTTCTCTTGACTTCTCTCAATCCAATACAAGGCTGGCCTGGCCAATTAAAGCAAAGCAAAGCTGTTACAATGAATAGTTCTGTTATCAGTGTTCCTCATTACTAGCAGAAACATGCCAGTGACTGAAACATTTATCAGCACGCAACAACCCATAATCTTGGATGGGTATTTCCTTTTTGCTCTGCTCTATTTAATTCTTAGTGCTTGTGCCTGCATGTAAGGACAAGACTCAGGCGTGTCTGTCTGATAGCTTTCTTGCTTGGTTCCTGTTATATGTCTGAAAATCATTGAGCCTGTTTGAGTTTGGTAGCAGATCCAATCAAGCAAATACCCCACAAGCTTCTCATCATAATCCGATTGTGAGAAATCCATTTGTCTTGATTTTAATTGATCTCCCTAAAACCAATCTTGGTTTTTTGGGAAAAACCCAATCTGGGTCTTTGTTGTTTGATCTCATTCAGCATACCATTCTGTTTCCCATGCTGATTCCTTTGGTAGTTTTTGCCTCCTGCCTGATTGCCTTACTACCAATCTAAGCAATATTGGATAGGTACTCAGCACCTGAAACAGGAGGCGGTATTCAGTTGACAAGAAGTGGTAATCTGGCTACCAGGCACCTACTTTTGTCAAGGTATGAATTGGAAATCTTGCCGGCCTGGAAGATAATTCTATAGTTTTTGTTGAGGTCAGCAGTTGAATCTGCGAGGTATTTCAAATAGGCACTGAGCACTCTGGTGGCTGAGCAGATCCGTTTTTAGTTCCCCTTCTTTATTTTCTCAGATCCGTAAGTGGGTGGTGATATGGGCCGCGGCCGAGGCAAAAGGGAAGAAGCTAACAGCGGTTTCTAGTCATGAGGATCCGGGGAGCGGGGGTGAGGAATTCATTCCTGCTTACAGGAGAAGAGGCCGCCCTCAGAAAGGGGCCAAGGACGAGCTAGAGGATGAAGAGGTGGAGAAGATTGAAGAAGAGGAGGATATAAAACCTGTGAATGTGAACAAGGATAGCAAGGTTCAGGTAGGGACTGAGAATGGAAAGAAGAGGAAGAGGCATGCCCAGATCACAGAGAGTTTGGATTTCGCTGCAGATAAAAATGGGATTCCAGGCAGATCTGCCATTGATGAACCCACTAAGCCAAATGCCTTGATAAGGAATGGAAGCAGGCGCAAGAGCAAACCTCGGCGAGCAGCGGAAGCTGGCGTGGAATTTTGA___ATCAAATACCCCGGCTTCTTTTGCCATTCCAGGAGATGAAGGGAGTGCCATCTTTCTGCACTTTATCTACTTGGCAAGTACACATATATCAGTTCTTTAGGACTTAGATTTCAGCTACTTTGTTGAATGAATGATTTATTGATCAAGATGTGGCAGTCAATCTATGTACTGCTGTTCATCAAGGCCAAATAGGTACGGATCATAACAATTCCTTGCAGTTGAATCAGTATACTTTCTTGTTTCAAGTATTGTTTCTCTGTCAATGACTTGTTTCTGATATAGCATGCTTGAATATTTGTCACTCGGCCACACCTTACGATTTTTTGGTGTCAATCTTGAGAACCCAATTAAACTCTAGAAGGATTGAGTGAAGAGAGCGTCCTGTCTTATGTTAATCATTTGAAGATTTGGTAAGCTCTTAAACATAACTTCACACTGGTATACATCCACATTCTCTTCTCTTCTCTTTTTCTTACCATGATGAATTGTAATTCATTGGAGTAATATAGATGAGGCCTATGATCGAATTTAGTGGTTGTTACTATAACACCACCTGTATATCCAACAGCTTACAATCC

Fln Alignment:

Contig165___KGKKLTAVSSHEDPGSGGEEFIPAYRRRGRPQKGAXXXXXXXXXXXXXXXXXXKPVNVNKDSKVQVGTENGKKRKRHAQITESLDFAADKNGIPGRSAIDEPTKPNALIRNGSRRKSKPRRAAEAGVE
B8LQ71________________KGKKLTAVSSHEDPGSGGEDFIPAYRRRGRPQKGAKDELEDEEVEKIEEEEDIKPVNTNKDNKVQVGTENGKKRKRHAQITESLDLAADKNGVPGRSAIDEPTKPNALIRNGSRRKSKPRRAAEAGVE

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1411	80		20		0.995493
1590	83		16		0.994512
1613		20	80		0.995493
1614	80	20			0.995493
1615		33	66		0.997452
1659			87	12	0.992554
1669		12		87	0.992554
1677		12		87	0.992554
1714	87	12			0.992554
1716	87	12			0.992554
1718		87		12	0.992554
1719			12	87	0.992554
1720	75	25			1.0
1721		25	12	62	1.0
1722	12	25		62	1.0
1867		33	66		0.997452
1868		33	66		0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
111	127	AAGAG AAGAG AAGAG AA	17
1726	1740	GCTTT GCTTT GCTTT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain