| General Information |
| Organism: |
Pinus pinaster |
| Tissue: |
several |
| Description: |
Differentiating xylem, swelling bud and young needles were harvested on 6 genotypes of the maritime pine breeding program. Composite cDNA libraries were then generated by mixing an equal amount of total RNA extracted from each tissue. The 6 libraries were subjected to high throughput sequencing on a 454 Titanium platform.
|
| Assembly Statistics |
|
| Number of used reads: |
591320 |
| Number of unigenes: |
36528 |
| Mean contig length: |
674 |
| SNPs statistics |
|
| Tot. SNPs: |
163125 |
| Unigenes with SNPs: |
19244 |
| Mean SNPs per unigene: |
8.4 |
| SSRs statistics |
|
| Tot. SSRs: |
2757 |
| Mean SSRs per unigene: |
1.1 |
| SSRs di-nucl. : |
179 |
| SSRs tri-nucl. : |
1635 |
| SSRs > tri-nucl. : |
943 |
| Annotations statistics |
|
| Annotated unigenes: |
33129 |
| Descriptions: |
23986 |
| Gos: |
3935 |
| Interpros: |
5024 |
| ECs: |
856 |
| Keggs: |
146 |
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| Project components |
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| Assembly components: |
|
| Unigenes file: |
biogeco1_v2.0_unigenes.fasta |
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| ACE file: |
biogeco1_v2.0.ace |
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| Download annotations for specified unigenes: |
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| SFFs: |
| File 1: |
biogeco1_v2.0 |
Download(NCBI)
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| SeqTrimNext reports: |
| | |
| File 1: |
biogeco1_v2.0_report.pdf |
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