SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco1 v2.0

UniGene Name: biog1_v2.0_unigene17

Length: 653 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog1_v2.0_unigene17 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1606	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] sp\|Q8RXS6.2\|INO80_ARATH RecName: Full=DNA helicase INO80; Short=AtINO80; AltName: Full=Putative DNA helicase INO80 complex homolog 1 gb\|AEE79637.1\| DNA helicase INO80 complex-like 1 [Arabidopsis tha	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	chromatin remodeling complex subunit	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of DNA repair	GO:0045739	Biological Process	82%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	82%
Blast2go	somatic cell DNA recombination	GO:0016444	Biological Process	82%
Blast2go	DNA binding	GO:0003677	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	transferase activity	GO:0016740	Molecular Function	82%
Blast2go	helicase activity	GO:0004386	Molecular Function	82%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	HSA	IPR006562	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	HAS subgroup	IPR013999	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3	SLIDE domain	IPR015195	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain