SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19902

Length: 578 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene19902 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16962	8/9

Source	Descriptions	Term	Type	Identity
AutoFact	calcium-dependent lipid-binding domain-containing plant phosphoribosyltransferase-like protein [Arabidopsis thaliana] emb\|CAB67616.1\| anthranilate phosphoribosyltransferase-like protein [Arabidopsis thaliana] gb\|AEE79712.1\| calcium-dependent lipid-binding	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	c2 domain-containing protein	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	87%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Phosphoribosyltransferase C-terminal	IPR013583	-	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
290	85		14		0.993533
326	85			14	0.993533
331		85		14	0.993533
334	14	85			0.993533
336	85	14			0.993533
339		16		66	0.988813
351		20	80		0.995493
353	60		20	20	0.99255

SSRs (tot: 1)

Start position	End position	Sequence	Length
147	166	GGCTC GGCTC GGCTC GGCTC	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain