| General Information |
| Organism: |
Pinus pinaster |
| Tissue: |
several |
| Description: |
cDNA libraries were generated using total RNA extracted from quiescent buds harvested on 2 years old maritime pine (fast or low growing family) in well watered or drought stress conditions. The libraries were subjected to high throughput sequencing on a 454 Titanium platform.
|
| Assembly Statistics |
|
| Number of used reads: |
195234 |
| Number of unigenes: |
20025 |
| Mean contig length: |
520 |
| SNPs statistics |
|
| Tot. SNPs: |
47245 |
| Unigenes with SNPs: |
8087 |
| Mean SNPs per unigene: |
5.8 |
| SSRs statistics |
|
| Tot. SSRs: |
1135 |
| Mean SSRs per unigene: |
1.1 |
| SSRs di-nucl. : |
67 |
| SSRs tri-nucl. : |
682 |
| SSRs > tri-nucl. : |
386 |
| Annotations statistics |
|
| Annotated unigenes: |
18910 |
| Descriptions: |
15785 |
| Gos: |
3716 |
| Interpros: |
4521 |
| ECs: |
742 |
| Keggs: |
144 |
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| Project components |
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| Assembly components: |
|
| Unigenes file: |
biogeco2_v2.0_unigenes.fasta |
|
| ACE file: |
biogeco2_v2.0.ace |
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| Download annotations for specified unigenes: |
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| SFFs: |
| File 1: |
biogeco2_v2.0 |
Download(NCBI)
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| SeqTrimNext reports: |
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